Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_B13
(237 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 69 6e-14
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo... 64 2e-12
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb... 27 0.44
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 26 0.76
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces... 25 1.0
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 25 1.0
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 25 1.0
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 24 2.3
SPAC12G12.02 ||SPAC630.01c|rRNA processing protein, unnamed|Schi... 24 2.3
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 24 2.3
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 24 2.3
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 24 3.1
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 23 4.1
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces... 23 4.1
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c... 23 4.1
SPAC823.10c |||mitochondrial carrier with solute carrier repeats... 23 5.4
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 23 5.4
SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c... 23 5.4
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 23 5.4
SPCC1223.15c |spc19||DASH complex subunit Spc19|Schizosaccharomy... 23 7.1
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce... 23 7.1
SPAC1B3.02c |||transcription elongation factor, Elf1 family|Schi... 23 7.1
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc... 23 7.1
SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy... 23 7.1
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p... 23 7.1
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc... 23 7.1
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 23 7.1
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 23 7.1
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 23 7.1
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz... 22 9.4
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 22 9.4
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 22 9.4
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo... 22 9.4
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual 22 9.4
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c... 22 9.4
SPBC13G1.02 |||mannose-1-phosphate guanyltransferase |Schizosacc... 22 9.4
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 22 9.4
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 22 9.4
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 69.3 bits (162), Expect = 6e-14
Identities = 31/65 (47%), Positives = 46/65 (70%)
Frame = +3
Query: 9 LASLPPNVRKRIRALRTLQKQFVDIEAKFYSEVHALECKYEKLYKPLFEKRAEIVNGIYE 188
++ LP V++RI LR LQK++ D+E++F E+ LE Y K Y P+F++R+E+V G E
Sbjct: 68 VSELPEAVQRRISGLRGLQKRYSDLESQFQKELFELEKAYAKKYAPIFKRRSEVVRGADE 127
Query: 189 PTEEE 203
PTEEE
Sbjct: 128 PTEEE 132
>SPBC2D10.11c |||nucleosome assembly protein Nap2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 64.1 bits (149), Expect = 2e-12
Identities = 30/65 (46%), Positives = 44/65 (67%)
Frame = +3
Query: 9 LASLPPNVRKRIRALRTLQKQFVDIEAKFYSEVHALECKYEKLYKPLFEKRAEIVNGIYE 188
+ SL P V+ RI AL+ LQK I+ +F ++ LE KYEK Y+P+F +RAEI+ G+ E
Sbjct: 84 IESLAPAVQNRITALKGLQKDCDAIQYEFRQKMLDLETKYEKKYQPIFSRRAEIIKGVSE 143
Query: 189 PTEEE 203
P ++E
Sbjct: 144 PVDDE 148
>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 415
Score = 26.6 bits (56), Expect = 0.44
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 114 LECKYEKLYKPLFEKRAEIVNGIYEPTE 197
+ CKYE+++ P A +V GI+ E
Sbjct: 248 IACKYEEIHPPSIYNFAHVVQGIFTVDE 275
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 0.76
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 40 VYALCEHYKNSSWTLRLNSTVKF 108
+ ALCE K SWT+ + + F
Sbjct: 48 IQALCERLKEQSWTIVFKTLIVF 70
>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 1.0
Identities = 13/40 (32%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +3
Query: 66 KQFVDIEAKF-YSEVHALECKYEKLYKPLFEKRAEIVNGI 182
+ ++E +F +E+ L+ K +L++PLFE+R +I+ I
Sbjct: 8 ENLANLEQEFGKAEIEILK-KQNELFQPLFEQRRDILKTI 46
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1136
Score = 25.4 bits (53), Expect = 1.0
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 66 KQFVDIEAKFYSEVHALECKYEKLYKPLFEKRAEI 170
++F +I K++ + + L C Y L K LFE+ A I
Sbjct: 880 REFQEIAEKYHHQ-NLLSCYYLHLSKKLFEESAYI 913
>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
Crm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1078
Score = 25.4 bits (53), Expect = 1.0
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +3
Query: 42 IRALRTLQKQFVDIEAKFYSEVHALECKYEKLYKPLFEK-RAEIVNGIYEPTEEECLN 212
+R LRT++K+ + + + S LE L LFE + + + + + E LN
Sbjct: 746 VRGLRTIKKEILKLVDAYISRAEDLELVGNTLIPALFEAVLLDYLQNVPDARDAEVLN 803
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 24.2 bits (50), Expect = 2.3
Identities = 8/23 (34%), Positives = 11/23 (47%)
Frame = +1
Query: 16 LYHPMCVNVYALCEHYKNSSWTL 84
++HP +Y LC K W L
Sbjct: 224 VFHPDAARLYRLCSSLKRICWEL 246
>SPAC12G12.02 ||SPAC630.01c|rRNA processing protein,
unnamed|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 24.2 bits (50), Expect = 2.3
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = +3
Query: 36 KRIRAL-RTLQKQFVDIEAKFYSEVHALECK----YEKLYKPLFEKRAEIVNGIYEPTEE 200
+RI+ L ++L+ + +D E + E +C+ Y K Y PL + + G E TEE
Sbjct: 76 RRIKQLEKSLKDETMDDEKRKQCEKSMRKCQIDLMYIKEYPPLTKYVSLYAEGTSEQTEE 135
Query: 201 ECLNPWRDETE 233
W + E
Sbjct: 136 TRNRIWAEMEE 146
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 24.2 bits (50), Expect = 2.3
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -1
Query: 222 PSRGSGTLPLLVHICRSLFQRAFQTMV 142
PS+ G L L+ +C +L + QT V
Sbjct: 194 PSQRPGALAYLLRVCNNLAEEDIQTRV 220
>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 24.2 bits (50), Expect = 2.3
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -2
Query: 191 WFIYAVHYFSALFKQWFI*LLVFAFQSVNFTVEFSLN 81
WF + Y S F+ +F+ FAF + T + S+N
Sbjct: 61 WFFIKMRYLSFFFEFFFLFSFAFAF-DFDVTSDDSIN 96
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 23.8 bits (49), Expect = 3.1
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -1
Query: 153 QTMVYIASRICIPERELHCRI*PQCPRTVFVMFAERVYVYAHWVVET 13
Q V + R+C P R H I Q ++ V + VY+ V+T
Sbjct: 478 QNGVAVNGRVCYPTRNKHSEISAQSSSSLGVTKSLASEVYSSSTVDT 524
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 23.4 bits (48), Expect = 4.1
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 117 ECKYEKLYKPLFEKRAEIVNGIYEPTEEE 203
EC E Y FE R I + +Y P EE
Sbjct: 107 ECGSENDYNHNFEGRFCICDTVYNPETEE 135
>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 580
Score = 23.4 bits (48), Expect = 4.1
Identities = 8/22 (36%), Positives = 11/22 (50%)
Frame = -1
Query: 78 PRTVFVMFAERVYVYAHWVVET 13
P +F + Y Y HW+V T
Sbjct: 461 PAGIFWLAWSGYYTYVHWIVPT 482
>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 801
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 102 EVHALECKYEKLYKPLFEK 158
E+ AL+C YE+ Y+ EK
Sbjct: 133 EMVALQCMYERKYRQSHEK 151
>SPAC823.10c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 296
Score = 23.0 bits (47), Expect = 5.4
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -3
Query: 214 GFRHSSSVGSYMPFT-ISARFSNNGLYSFSYLHS 116
GF ++ ++MP T I R+ +N LYS++ ++S
Sbjct: 114 GFARAAVGFAFMPVTVIKVRYESN-LYSYTTIYS 146
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 23.0 bits (47), Expect = 5.4
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +3
Query: 84 EAKFYSEVHALECKYEKLYKPLFEKRAEIVNGIYEPTEEECL--NPWRDET 230
+A+ + +H ++ E L +FE+R I+ + E CL + W DET
Sbjct: 114 QARVFCLIHKMDLVQEDLRDLVFEERKAILLETSKDLETTCLATSIW-DET 163
>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 162 RAFQTMVYIASRICIPEREL 103
R+ QT++ RIC PE++L
Sbjct: 77 RSTQTLLANCLRICYPEKQL 96
>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 612
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = +3
Query: 129 EKLYKPLFEKRAEIVNGIYEPTEEECLNPWRDE 227
E +Y+ + +R+ + +P CL+PW E
Sbjct: 140 ECMYRNGYGRRSFRIEESVQPDTMSCLSPWGTE 172
>SPCC1223.15c |spc19||DASH complex subunit Spc19|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 152
Score = 22.6 bits (46), Expect = 7.1
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 39 RIRALRTLQKQFVDIEAKFYSEVHALECKYEKLYKPLFEK 158
RI+ + +Q+ F I E+ A + K+E++ KP+ K
Sbjct: 37 RIKHILKVQRHFNLISE---DELSARQAKFEEIVKPILSK 73
>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 576
Score = 22.6 bits (46), Expect = 7.1
Identities = 8/22 (36%), Positives = 11/22 (50%)
Frame = -1
Query: 78 PRTVFVMFAERVYVYAHWVVET 13
P +F + Y Y HW+V T
Sbjct: 457 PAGIFWLSWSGYYSYVHWIVPT 478
>SPAC1B3.02c |||transcription elongation factor, Elf1
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 22.6 bits (46), Expect = 7.1
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -1
Query: 105 LHCRI*PQCPRTVFVMFAERVYVYAHWV 22
LHC+I Q + + + + VY+ W+
Sbjct: 47 LHCKICGQSHQCLITALSAPIDVYSDWI 74
>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 807
Score = 22.6 bits (46), Expect = 7.1
Identities = 7/26 (26%), Positives = 16/26 (61%)
Frame = +1
Query: 55 EHYKNSSWTLRLNSTVKFTLWNANTR 132
+HY N+ W ++ + L++AN++
Sbjct: 327 KHYYNNDWQIKSAAITMALLYSANSQ 352
>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 22.6 bits (46), Expect = 7.1
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -2
Query: 218 PGVQALFLCWFIYAVHYFSALF 153
PG+ L + WF+ +H +S L+
Sbjct: 86 PGMALLTVPWFLAELHGYSYLY 107
>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1028
Score = 22.6 bits (46), Expect = 7.1
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 169 ISARFSNNGLYSFSYLHSRA 110
+S ++S N +Y F HSRA
Sbjct: 769 LSFKYSANEIYEFCGTHSRA 788
>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
scaffold protein Isu1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 192
Score = 22.6 bits (46), Expect = 7.1
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -1
Query: 138 IASRICIPERELHC 97
IA +C+P +LHC
Sbjct: 144 IAKELCLPPVKLHC 157
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 22.6 bits (46), Expect = 7.1
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = -1
Query: 198 PLLVHICRSLFQRAFQTMVYIASRICI 118
P + C SLF R+F M + S+ +
Sbjct: 417 PQIKSSCFSLFSRSFSNMTSLPSKFTV 443
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 22.6 bits (46), Expect = 7.1
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 36 KRIRALRTLQKQFVDIEAKFYSEVHALECKYEKL 137
+R RA + QF+DIEA+ + LE + +++
Sbjct: 134 RRKRARHDRRNQFLDIEAEVDEDEEELEDEEDEI 167
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 22.6 bits (46), Expect = 7.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 126 YEKLYKPLFEKRAEIVNGIYEPTEEECLN 212
Y++L+KP+F ++ +YE EE N
Sbjct: 278 YDQLHKPIFPPHWKVDFRLYEVFCEETKN 306
>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 504
Score = 22.2 bits (45), Expect = 9.4
Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 105 VHALECKYEKLY-KPLFEKRAEIVNGIYEPTEEECLNPWRDETED 236
+H + C + + + + + +++VNG E E L+PW D+ D
Sbjct: 283 LHTMLCGFPPFFDENIKDLASKVVNG-----EFEFLSPWWDDISD 322
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 22.2 bits (45), Expect = 9.4
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +3
Query: 102 EVHALECKYEKLYKPL--FEKRAEIVNGIYEPTEEECL 209
E+ LE + E+ +EK+ E + YE ECL
Sbjct: 161 EIERLEAETERANSETEQYEKQKEALEEEYEELRNECL 198
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 22.2 bits (45), Expect = 9.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 69 QFVDIEAKFYSEVHALECKYEKLYKPLFE 155
+F+D E KFY E ++E++ K + E
Sbjct: 481 EFMDAELKFYKECQT--SQWEEIIKSVHE 507
>SPAC22F3.12c |rgs1||regulator of G-protein signaling
Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 22.2 bits (45), Expect = 9.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 60 LQKQFVDIEAKFYSEV 107
L+K F D +FYSEV
Sbjct: 362 LKKNFCDENQRFYSEV 377
>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 22.2 bits (45), Expect = 9.4
Identities = 11/52 (21%), Positives = 23/52 (44%)
Frame = -1
Query: 222 PSRGSGTLPLLVHICRSLFQRAFQTMVYIASRICIPERELHCRI*PQCPRTV 67
PS+ S +V I R + + ++ + RIC ++ I P+++
Sbjct: 183 PSKASKDFLTIVVISRLYYNKGIDLLIAVIPRICAQHPKVRFVIAGDGPKSI 234
>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 959
Score = 22.2 bits (45), Expect = 9.4
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 7 GWRLYHPMCVNVYALCEHYKNSSWTLRLNSTVKFTL 114
G+ Y + VN +CE+ + W L N TV L
Sbjct: 577 GFLEYGNLTVNDSVVCEYDEIRRWHLMNNHTVTHIL 612
>SPBC13G1.02 |||mannose-1-phosphate guanyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 414
Score = 22.2 bits (45), Expect = 9.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 222 PSRGSGTLPLLVHICRSLFQRAFQTMVY 139
PSRG+ PL + + LF+ + M+Y
Sbjct: 12 PSRGTRFRPLSFDVPKPLFKIGGREMIY 39
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 22.2 bits (45), Expect = 9.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 206 ALFLCWFIYAVHYFSALFKQWFI 138
AL +C FIY H FS F +F+
Sbjct: 1451 ALVICPFIYNPHQFS--FVDFFV 1471
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 22.2 bits (45), Expect = 9.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 51 LRTLQKQFVDIEAKF 95
+R LQKQ D+EA F
Sbjct: 1968 VRMLQKQISDLEASF 1982
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,040,411
Number of Sequences: 5004
Number of extensions: 19066
Number of successful extensions: 93
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 58
effective length of database: 2,072,246
effective search space used: 41444920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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