Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_B13
         (237 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical pr...    63   2e-11
AC024753-1|AAF60456.1|  732|Caenorhabditis elegans Hypothetical ...    28   1.0  
U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical pr...    27   1.8  
Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    27   2.4  
Z81038-8|CAB02763.1|  328|Caenorhabditis elegans Hypothetical pr...    26   4.1  
U80843-8|AAB37963.1|  250|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical pr...    25   5.4  
U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated p...    25   5.4  
U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated p...    25   5.4  
U29614-8|AAA68812.2|  395|Caenorhabditis elegans Hypothetical pr...    25   5.4  
AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin...    25   5.4  
AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectr...    25   5.4  
AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectr...    25   5.4  
AF003150-4|AAB54217.1|  381|Caenorhabditis elegans Hypothetical ...    25   5.4  
AC006742-1|AAF60499.2| 1393|Caenorhabditis elegans Hypothetical ...    25   5.4  
Z70211-4|CAA94159.1|  825|Caenorhabditis elegans Hypothetical pr...    25   7.2  
AC024200-16|AAF36003.1|  511|Caenorhabditis elegans Hypothetical...    25   7.2  
Z73899-9|CAA98072.2|  905|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z11576-1|CAA77663.1|  625|Caenorhabditis elegans aromatic-L-amin...    25   9.5  
AF025465-6|AAB71030.1|  299|Caenorhabditis elegans Hypothetical ...    25   9.5  

>U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical
           protein D2096.8 protein.
          Length = 316

 Score = 63.3 bits (147), Expect = 2e-11
 Identities = 29/69 (42%), Positives = 45/69 (65%)
 Frame = +3

Query: 9   LASLPPNVRKRIRALRTLQKQFVDIEAKFYSEVHALECKYEKLYKPLFEKRAEIVNGIYE 188
           + +LP NV++R+ AL+ LQ + + IE+ FY  VH LE ++E  +K  F++R  IV G  E
Sbjct: 19  IQALPLNVKQRVCALKNLQMKTIQIESDFYKRVHELEIEFEGKFKSTFDQRKAIVAGEVE 78

Query: 189 PTEEECLNP 215
           PT+E+   P
Sbjct: 79  PTKEQIDTP 87


>AC024753-1|AAF60456.1|  732|Caenorhabditis elegans Hypothetical
           protein Y23H5B.6 protein.
          Length = 732

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 12/40 (30%), Positives = 26/40 (65%)
 Frame = +3

Query: 24  PNVRKRIRALRTLQKQFVDIEAKFYSEVHALECKYEKLYK 143
           P+VRK ++  R L+K+  D++ +  + +  +E KY+++ K
Sbjct: 30  PSVRKALKEKRLLKKRKQDLKGQEETMLDEVEQKYQEMLK 69


>U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical
           protein F59A6.5 protein.
          Length = 1286

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +3

Query: 24  PNVRKRIRALRTLQKQFVDIEAKFYSEVHALECKYEKLYKPLFEKRAEIVN 176
           P + +R   L T+ +    +  +   EV ALE + + L   L EKR ++V+
Sbjct: 665 PKLGRRSTLLSTVSEMDTSVYMREAEEVRALEEQRQALMSNLAEKRRQLVD 715


>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = +3

Query: 63  QKQFVDIEAKFYSEVHALECKYEKLYKPLFEKRAEIVNGIYEPTEEECLNPWRDETE 233
           ++Q  ++E K   E    E K E+  K   EK+ + V    E  EE+ L P +DE E
Sbjct: 325 EEQKEEVEKKEEEEKKDEEPKKEEEKKEEEEKKEDEVEEKSEKVEEKELEPKKDEEE 381


>Z81038-8|CAB02763.1|  328|Caenorhabditis elegans Hypothetical
           protein C25A1.12 protein.
          Length = 328

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +3

Query: 117 ECKYEKLYKPLFEKRAEIVNGIYEPTEEECLN 212
           E  YE  Y P+  KR E+      P E E LN
Sbjct: 82  EVSYEAKYVPVRFKRGEVYTVTVRPREAENLN 113


>U80843-8|AAB37963.1|  250|Caenorhabditis elegans Hypothetical
           protein C32B5.7 protein.
          Length = 250

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +3

Query: 174 NGIYEPTEEEC 206
           +GIY PTEEEC
Sbjct: 209 SGIYNPTEEEC 219


>Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical protein
            T20G5.1 protein.
          Length = 1681

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +3

Query: 120  CKYEKLYKPLFEKRAEIVNGIYEPTEEECLNPWRDE 227
            CK +KLYK   E  AE  NG      EE L+ + DE
Sbjct: 1530 CKKDKLYKDAMEYAAESRNG---ELAEELLSFFLDE 1562


>U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated
            protein 70, isoform a protein.
          Length = 2257

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 42   IRALRTLQKQFVDIEAKFYSEVHALECKYEKLYKPL 149
            IRAL T   +FV+ ++    ++   + + EKLY  L
Sbjct: 1638 IRALATKAHKFVEEKSPLTEQIQVRQAQIEKLYAGL 1673


>U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated
            protein 70, isoform b protein.
          Length = 2302

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 42   IRALRTLQKQFVDIEAKFYSEVHALECKYEKLYKPL 149
            IRAL T   +FV+ ++    ++   + + EKLY  L
Sbjct: 1638 IRALATKAHKFVEEKSPLTEQIQVRQAQIEKLYAGL 1673


>U29614-8|AAA68812.2|  395|Caenorhabditis elegans Hypothetical
           protein F18E9.7 protein.
          Length = 395

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/44 (22%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
 Frame = +3

Query: 24  PNVRKRIRALRTLQKQFVD--IEAKFYSEVHALECKYEKLYKPL 149
           P+  K ++ ++++ ++ +   ++ + +S+V A++  Y+K Y+PL
Sbjct: 141 PSFPKVLQMIKSMLREPIQQVLQQQIWSKVLAVQAYYKKFYQPL 184


>AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin
            protein.
          Length = 2257

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 42   IRALRTLQKQFVDIEAKFYSEVHALECKYEKLYKPL 149
            IRAL T   +FV+ ++    ++   + + EKLY  L
Sbjct: 1638 IRALATKAHKFVEEKSPLTEQIQVRQAQIEKLYAGL 1673


>AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectrin
            protein.
          Length = 2257

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 42   IRALRTLQKQFVDIEAKFYSEVHALECKYEKLYKPL 149
            IRAL T   +FV+ ++    ++   + + EKLY  L
Sbjct: 1638 IRALATKAHKFVEEKSPLTEQIQVRQAQIEKLYAGL 1673


>AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectrin
            protein.
          Length = 2302

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 42   IRALRTLQKQFVDIEAKFYSEVHALECKYEKLYKPL 149
            IRAL T   +FV+ ++    ++   + + EKLY  L
Sbjct: 1638 IRALATKAHKFVEEKSPLTEQIQVRQAQIEKLYAGL 1673


>AF003150-4|AAB54217.1|  381|Caenorhabditis elegans Hypothetical
           protein T05E7.5 protein.
          Length = 381

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 16/58 (27%), Positives = 24/58 (41%)
 Frame = +3

Query: 15  SLPPNVRKRIRALRTLQKQFVDIEAKFYSEVHALECKYEKLYKPLFEKRAEIVNGIYE 188
           S  PN+ KR   +      F   E+K  SE+  L+ K +       + R E+ N   E
Sbjct: 52  SFSPNILKRTETMFAENPFFTPTESKLKSEIALLQMKLDDERFDHQKTRRELANSRLE 109


>AC006742-1|AAF60499.2| 1393|Caenorhabditis elegans Hypothetical
           protein Y38C1AB.4 protein.
          Length = 1393

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 21  PPNVRK-RIRALRTLQKQFVDIEAKFYSEVHALECKYEKLYKPLFEK 158
           PP  RK R      +  +FV+ E     ++ A+  KY K+ K +FEK
Sbjct: 361 PPRYRKSREIEEPVVVDRFVEEEVDEKEDIDAIFEKYRKVRKDIFEK 407


>Z70211-4|CAA94159.1|  825|Caenorhabditis elegans Hypothetical
           protein K11E4.4 protein.
          Length = 825

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 100 VKFTLWNANTRSYINHCLK 156
           +++TLWN +    + HCLK
Sbjct: 161 IEWTLWNEDPLEPMTHCLK 179


>AC024200-16|AAF36003.1|  511|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.2 protein.
          Length = 511

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 55  EHYKNSSWTLRLNSTVKF-TLWNANTRSYINHCLKSALK 168
           EHYKN S  LRL S  K  T  NA+ R  ++  + S LK
Sbjct: 334 EHYKNQSTILRLFSDEKNPTRLNADMRRQLDE-IYSMLK 371


>Z73899-9|CAA98072.2|  905|Caenorhabditis elegans Hypothetical
           protein ZK829.2 protein.
          Length = 905

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 181 MPFTISARFSNNGLYSFSYLH 119
           +PF + A F  +G  SF +LH
Sbjct: 580 IPFFVGANFGTSGPCSFDHLH 600


>Z11576-1|CAA77663.1|  625|Caenorhabditis elegans aromatic-L-amino
           acid  decarboxylaseprotein.
          Length = 625

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 181 MPFTISARFSNNGLYSFSYLH 119
           +PF + A F  +G  SF +LH
Sbjct: 300 IPFFVGANFGTSGPCSFDHLH 320


>AF025465-6|AAB71030.1|  299|Caenorhabditis elegans Hypothetical
           protein K02E7.10 protein.
          Length = 299

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +3

Query: 177 GIYEPTEEECLN 212
           GIY PT+EEC N
Sbjct: 227 GIYNPTKEECGN 238


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,739,175
Number of Sequences: 27780
Number of extensions: 104548
Number of successful extensions: 378
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 12,740,198
effective HSP length: 58
effective length of database: 11,128,958
effective search space used: 222579160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)