Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_B13
         (237 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   2.7  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    20   4.7  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    19   6.2  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    19   6.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    19   6.2  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    19   8.3  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    19   8.3  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 20.6 bits (41), Expect = 2.7
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
 Frame = +3

Query: 90  KFYSEVHALECKYEKLYKPLFEKRAEIVNG----IYEPTEEECLNP 215
           K   EV A+  K+E+ ++       E +NG    +  P +EE   P
Sbjct: 204 KSVGEVMAIGRKFEEAFQKALRMVDENINGFDPYVKTPNDEELEKP 249


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 19.8 bits (39), Expect = 4.7
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -1

Query: 204 TLPLLVHICRSLFQR 160
           TLP   H+C   F R
Sbjct: 40  TLPCKCHLCGKAFSR 54


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 19.4 bits (38), Expect = 6.2
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -2

Query: 188 FIYAVHYFSALFKQWFI 138
           ++Y V  F  ++  WFI
Sbjct: 223 WVYFVPLFLIIYSYWFI 239


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 19.4 bits (38), Expect = 6.2
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -2

Query: 188 FIYAVHYFSALFKQWFI 138
           ++Y V  F  ++  WFI
Sbjct: 99  WVYFVPLFLIIYSYWFI 115


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 19.4 bits (38), Expect = 6.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 72  TVFVMFAERVYVYAHWVVE 16
           T  V+F+ER  +   W VE
Sbjct: 480 TAIVIFSERPNLLEGWKVE 498


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 19.0 bits (37), Expect = 8.3
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 215 GVQALFLCWFIYAVHYFS 162
           GVQ   L +FI  +++ S
Sbjct: 446 GVQGALLSYFIEPIYFHS 463


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 19.0 bits (37), Expect = 8.3
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -3

Query: 154 SNNGLYSFSYLH 119
           +  G Y F+YLH
Sbjct: 41  NRTGRYMFTYLH 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,790
Number of Sequences: 438
Number of extensions: 1278
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  3898467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)