Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_B12
(425 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0507 + 3655570-3655573,3655648-3655832 67 5e-12
10_08_0704 - 20018477-20018542,20018693-20018704,20018731-200189... 29 1.2
02_01_0460 + 3323236-3323950,3325087-3326025,3326104-3326723 29 2.1
08_01_0566 - 5028512-5029150 28 2.7
07_03_0447 + 18301421-18301520,18301900-18302060 28 3.6
02_05_0690 - 30943184-30943305,30944048-30944459,30944549-309446... 28 3.6
12_01_0049 + 417325-419068,419667-420307 27 4.8
06_03_1248 + 28685911-28687719 27 4.8
05_05_0276 + 23771233-23771268,23773552-23773897,23774425-237745... 27 4.8
04_04_0562 + 26252253-26253014 27 4.8
02_01_0130 - 938530-939990 27 4.8
01_06_1249 - 35714645-35716003,35716700-35716761,35717007-357171... 27 4.8
01_01_0069 + 536787-537068,537193-537493,537528-537581,538848-53... 27 4.8
12_01_0107 - 843820-846335,846400-846511 27 6.3
11_06_0311 - 22279202-22279690,22279976-22280103,22281249-222813... 27 6.3
12_02_0206 - 15518283-15518342,15518432-15518539,15519088-155191... 27 8.3
12_01_1097 + 11531899-11532277,11532482-11533287,11534015-115342... 27 8.3
10_08_0371 + 17265691-17265788,17265873-17265971,17266586-172666... 27 8.3
04_04_1188 + 31579833-31579914,31580001-31580176,31580822-315809... 27 8.3
03_03_0172 - 15082426-15082616,15084243-15084741 27 8.3
02_05_0895 - 32593155-32593190,32594228-32594279,32594544-325945... 27 8.3
>06_01_0507 + 3655570-3655573,3655648-3655832
Length = 62
Score = 67.3 bits (157), Expect = 5e-12
Identities = 32/59 (54%), Positives = 37/59 (62%)
Frame = +2
Query: 242 GKVHGSLARAGKVKGQTPXXXXXXXXXXXXXXXXXXIQYNRRFVNVVQTFGRRRGPNSN 418
GKVHGSLARAGKV+GQTP +QYNRRFV V FG++RGPNS+
Sbjct: 2 GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
>10_08_0704 -
20018477-20018542,20018693-20018704,20018731-20018927,
20018928-20018999,20019159-20021289
Length = 825
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +2
Query: 65 VLDVNGQESIGDIK--NRLRLLADVESEEVTLSMCGAPLEDSCLVSELSSTE 214
+L+++ G I N+L+ L+D +CG PL SC S L+S E
Sbjct: 725 ILNLSNNHLSGKIPTGNQLQTLSDPSIYHNNYGLCGFPLNISCTSSSLASDE 776
>02_01_0460 + 3323236-3323950,3325087-3326025,3326104-3326723
Length = 757
Score = 28.7 bits (61), Expect = 2.1
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 107 NRLRLLADVESEEVTLSMCGAPLEDSCLVSELSSTELD 220
N+LR L D L +CG PL+ SC S+T L+
Sbjct: 665 NQLRTLDDPSIYANNLGLCGFPLKISCSNHSSSTTTLE 702
>08_01_0566 - 5028512-5029150
Length = 212
Score = 28.3 bits (60), Expect = 2.7
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Frame = +2
Query: 32 MQLHIRGQSTHVL--DVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSEL- 202
MQ+ +R + L +VN +++G +K +++ + + + L G LED ++E
Sbjct: 1 MQIFVRTVTAGPLAVEVNPWDTVGKVKAKIQAKGGIPAAQQRLMFAGRHLEDGRTLAEYG 60
Query: 203 --SSTELDLTVPLLGGKVHG 256
L L + L GG G
Sbjct: 61 IKKEANLHLALRLRGGGAAG 80
>07_03_0447 + 18301421-18301520,18301900-18302060
Length = 86
Score = 27.9 bits (59), Expect = 3.6
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +2
Query: 32 MQLHIRGQSTHV-LDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLED 181
MQ+ +R + L+V G ++IGD+K ++ + +++ L G L+D
Sbjct: 1 MQIFVRTLDECITLEVEGSDTIGDVKVKIHDKNGIPADDQRLMHAGRQLDD 51
>02_05_0690 -
30943184-30943305,30944048-30944459,30944549-30944610,
30944724-30944787,30944880-30944947,30945039-30945168,
30945276-30945341,30945794-30946369
Length = 499
Score = 27.9 bits (59), Expect = 3.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 384 WTTFTNLLLYWILRLARPVLFFFFCCFST 298
W + +L WIL PVL FFC FS+
Sbjct: 66 WGSLVHLGDSWILAFWFPVLTEFFCAFSS 94
>12_01_0049 + 417325-419068,419667-420307
Length = 794
Score = 27.5 bits (58), Expect = 4.8
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Frame = +2
Query: 53 QSTHVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPL--EDSCLVSELSST--ELD 220
Q V+D++G G I +RL LAD++ TL + G L E +S L++T +
Sbjct: 277 QKLQVMDLSGNRLNGTIPDRLGSLADLK----TLDLSGNALTGEIPASLSNLTTTLQAFN 332
Query: 221 LTVPLLGGKVHGSLAR 268
++ L G+V SLA+
Sbjct: 333 VSNNNLSGQVPASLAQ 348
>06_03_1248 + 28685911-28687719
Length = 602
Score = 27.5 bits (58), Expect = 4.8
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 128 DVESEEVTLSMCGAPLEDSCLVSELSSTELDLT--VPLLGGKVHGSLARAGKVKGQTP 295
DVE+E+ + S PL + + E +STE T V G KV ++ R + +G+ P
Sbjct: 500 DVETEQASSSDPATPLNEEAINEEGTSTETGKTKKVAFKGSKVKTAMER--RPEGEQP 555
>05_05_0276 +
23771233-23771268,23773552-23773897,23774425-23774541,
23774712-23774810,23774949-23775016,23775107-23775181,
23775386-23775931,23776040-23776092,23776163-23776204,
23776314-23776458,23776541-23776651,23777496-23777921,
23778116-23778373
Length = 773
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -1
Query: 242 HQEEAL*GRAQLMKALTQDMSPQGAHRT*TESPPHSQHQQEA 117
H+++ L A +M+A M T + PP QH+Q A
Sbjct: 204 HRKDHLPKNANIMQAQHYPMGKSSGFNTGSSCPPRKQHKQTA 245
>04_04_0562 + 26252253-26253014
Length = 253
Score = 27.5 bits (58), Expect = 4.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 188 DMSPQGAHRT*TESPPHSQHQQEA 117
D+ G HR E+ PH++HQ++A
Sbjct: 79 DVRCPGVHRDAIEAEPHTEHQRDA 102
>02_01_0130 - 938530-939990
Length = 486
Score = 27.5 bits (58), Expect = 4.8
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -3
Query: 276 LPARARDPCTLPPRRGTVRSSSV-DESSDTRHESSRGAPHID 154
LP+ +R CT P G+V V D + T HE+S + D
Sbjct: 32 LPSTSRISCTEPSNGGSVMELEVMDRNEQTYHENSSASEDED 73
>01_06_1249 -
35714645-35716003,35716700-35716761,35717007-35717181,
35717276-35717301,35717917-35717983,35719803-35719945,
35720337-35720349
Length = 614
Score = 27.5 bits (58), Expect = 4.8
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = -3
Query: 288 WPLTLPARARD-PCTLPPRRGTVRSSSVDESSDTRHESSRGAPHID 154
+P P +D P R G R +VDE + R E GAPH D
Sbjct: 91 YPDVFPGSYQDEPDGEAGRAGLRRRQAVDEVAARREEPQGGAPHDD 136
>01_01_0069 +
536787-537068,537193-537493,537528-537581,538848-539241,
539345-539595,539678-539798,539893-540133,540341-540445,
540571-540615,540738-540890,541132-541410,541705-541841,
541975-542017,542228-542329
Length = 835
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 206 MKALTQDMSPQGAHRT*TESPPHSQHQQE 120
+K + D SPQG T S PH HQQ+
Sbjct: 30 LKRMQHDYSPQGT--IITTSTPHDHHQQQ 56
>12_01_0107 - 843820-846335,846400-846511
Length = 875
Score = 27.1 bits (57), Expect = 6.3
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 50 GQSTHVLDVNGQES-IGDIKNRLRLLADVESEE 145
G+ +H+LDV+G+ES I D+ + + D + +E
Sbjct: 362 GKESHILDVDGKESHILDVDGKQNHILDEDGKE 394
>11_06_0311 -
22279202-22279690,22279976-22280103,22281249-22281355,
22282799-22282888,22283590-22283660
Length = 294
Score = 27.1 bits (57), Expect = 6.3
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -1
Query: 167 HRT*TESPPHSQHQQEAGGDS*Y 99
H T T SP H+QH Q AG Y
Sbjct: 205 HPTNTLSPLHNQHHQSAGASQVY 227
>12_02_0206 -
15518283-15518342,15518432-15518539,15519088-15519172,
15519788-15519852
Length = 105
Score = 26.6 bits (56), Expect = 8.3
Identities = 15/66 (22%), Positives = 28/66 (42%)
Frame = -3
Query: 402 RRRPKVWTTFTNLLLYWILRLARPVLFFFFCCFSTLGVWPLTLPARARDPCTLPPRRGTV 223
+ R +W F + + + R ++FFFFC S L + ++ + + P +
Sbjct: 8 KSREDMWQRFPSKITLFPPSHIRSLIFFFFCSESDLVIQIISKEKKEKRPMGIFEAYAEA 67
Query: 222 RSSSVD 205
R S D
Sbjct: 68 RKSGKD 73
>12_01_1097 +
11531899-11532277,11532482-11533287,11534015-11534284,
11534939-11535454
Length = 656
Score = 26.6 bits (56), Expect = 8.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 282 LTLPARARDPCTLPPRRGTVRSSSVDESSDTR 187
L PA+ + P PR+G+ SSS + S TR
Sbjct: 379 LEQPAQRKPPSAPKPRKGSGPSSSPHDESSTR 410
>10_08_0371 +
17265691-17265788,17265873-17265971,17266586-17266628,
17267250-17267321,17267400-17267495,17267609-17267842,
17267914-17268097,17268247-17268358,17268447-17268533,
17268703-17268841,17269628-17269718,17270045-17270154,
17270309-17270413,17270982-17271055,17271379-17271454,
17271786-17272022,17272419-17272490,17273082-17273153,
17273240-17273304,17273306-17273383,17273384-17273486,
17273769-17273858,17274873-17274980,17275063-17275113,
17276126-17276203,17276284-17276346,17276944-17277140,
17277243-17277312,17277640-17277828
Length = 1030
Score = 26.6 bits (56), Expect = 8.3
Identities = 13/51 (25%), Positives = 29/51 (56%)
Frame = +2
Query: 86 ESIGDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSELSSTELDLTVPLL 238
E D++ LRLL ++ S+++ + + +E S ++E+ +D+ PL+
Sbjct: 795 EKYKDLRALLRLLTNICSKDLVGFLSDSSIEGSQDIAEVIYVGVDIVTPLI 845
>04_04_1188 +
31579833-31579914,31580001-31580176,31580822-31580923,
31581015-31581245,31581821-31581922,31582092-31582184,
31582275-31582379,31582455-31582514,31582621-31582698,
31582778-31582924,31583011-31583109,31583178-31583267,
31583360-31583451,31583529-31583646,31583783-31583871,
31583998-31584088,31584203-31584294,31584442-31584749,
31584866-31584897
Length = 728
Score = 26.6 bits (56), Expect = 8.3
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 273 PARARDPCTLPPRRGTVRSSSVDESSDTRHESS 175
PA+ P P + T + S DES D+ ESS
Sbjct: 298 PAKPTIPAKRPLTKDTKKGQSKDESEDSSDESS 330
>03_03_0172 - 15082426-15082616,15084243-15084741
Length = 229
Score = 26.6 bits (56), Expect = 8.3
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -2
Query: 118 PEAILDITDGFLTIHVKD-VRRLTSNVKLHFVSSYQES 8
P I+ IT LT +D + ++ SNVK F+ S+QE+
Sbjct: 186 PSNIVPITLDRLTAEQRDELEQMMSNVKNKFMDSFQET 223
>02_05_0895 -
32593155-32593190,32594228-32594279,32594544-32594584,
32594795-32594906,32595195-32595268,32595349-32595587,
32595710-32596678,32596725-32596878,32596957-32597244,
32597393-32597534,32598679-32598752,32598870-32598890
Length = 733
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 387 VWTTFTNLLLYWILRLARPVLFFFFCCFST 298
+W + LLY I R R +L+ F FST
Sbjct: 618 IWGSLWKDLLYQIFRAIRSILYGFVAFFST 647
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,317,019
Number of Sequences: 37544
Number of extensions: 213895
Number of successful extensions: 701
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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