Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_B09
(409 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 186 2e-48
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 183 8e-48
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 38 5e-04
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|... 26 2.0
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 2.6
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces... 25 3.4
SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Sch... 25 6.0
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 24 7.9
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|... 24 7.9
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 186 bits (452), Expect = 2e-48
Identities = 88/136 (64%), Positives = 104/136 (76%)
Frame = +1
Query: 1 ARGAVVAVEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPR 180
A + +E+PADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I +REPR
Sbjct: 63 AARVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPR 122
Query: 181 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCDTKSSHSIGLMWWVLAR 360
L++V DP D Q I EAS+VNIPVIALC+TDS L VDIAIP + K SIGL+W++LAR
Sbjct: 123 LIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAR 182
Query: 361 EVLRLRGVLSRDQRWD 408
EVLR+RG LSR WD
Sbjct: 183 EVLRVRGTLSRSAPWD 198
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 183 bits (446), Expect = 8e-48
Identities = 89/136 (65%), Positives = 103/136 (75%)
Frame = +1
Query: 1 ARGAVVAVEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPR 180
A + +E+PADV VISSR +G RAVLKFAAHTGAT IAGRFTPG FTN I +REPR
Sbjct: 64 AARVIATIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPR 123
Query: 181 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCDTKSSHSIGLMWWVLAR 360
L+IV DP D Q I EAS+VNIPVIALC+TDS L VD+AIP + K SIGL W++LAR
Sbjct: 124 LIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAR 183
Query: 361 EVLRLRGVLSRDQRWD 408
EVLRLRG +SR W+
Sbjct: 184 EVLRLRGNISRTTAWE 199
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 38.3 bits (85), Expect = 5e-04
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +1
Query: 175 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCDTKSSHSIGLMWWVL 354
P L+++L+P ++ EA ++P I + +TD+ R V IP + S L+ +L
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239
Query: 355 AR 360
+R
Sbjct: 240 SR 241
>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
Cut9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 26.2 bits (55), Expect = 2.0
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -2
Query: 228 FSNWLMILSRVQNNQQPWFA 169
F N L+++ + Q+N++PW A
Sbjct: 498 FQNALLLVKKTQSNEKPWAA 517
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.8 bits (54), Expect = 2.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 331 IGLMWWVLAREVLRLRGVLSRDQRWD 408
IGL W + REV R + + +R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 326
Score = 25.4 bits (53), Expect = 3.4
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 340 MWWVLAREVLRLRGVLSRDQRW 405
+WW L+R+ R LSR +W
Sbjct: 68 IWWSLSRKATRFYRWLSRSLKW 89
>SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 368
Score = 24.6 bits (51), Expect = 6.0
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +1
Query: 163 AFREPRLLIVLDPAQDHQPITEASY 237
A R+ RLL+++ P H P+ Y
Sbjct: 62 AGRDDRLLLIVGPCSLHDPVAAKEY 86
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 24.2 bits (50), Expect = 7.9
Identities = 12/45 (26%), Positives = 18/45 (40%)
Frame = +1
Query: 271 DSPLRFVDIAIPCDTKSSHSIGLMWWVLAREVLRLRGVLSRDQRW 405
++ R + + C+ SSH W REV R + R W
Sbjct: 450 NTKFRLIHVFANCELMSSHRRFPDWGDYQREVTCCRNCVERSTTW 494
>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 809
Score = 24.2 bits (50), Expect = 7.9
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 229 ASYVNIPVIALCNTDSPLRFVDIAIPC 309
++YV IPV C DS + +I + C
Sbjct: 518 STYVRIPVDKKCMEDSAISMKNILLDC 544
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,572,336
Number of Sequences: 5004
Number of extensions: 28006
Number of successful extensions: 71
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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