Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_B09
(409 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 174 3e-44
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 174 3e-44
08_01_0950 - 9428506-9428693,9429223-9429595,9430127-9430572,943... 29 1.9
07_03_0771 - 21381276-21381461,21381583-21381733,21381823-213820... 28 2.5
03_02_0792 + 11236785-11237337,11237711-11238261,11238446-112386... 27 4.3
04_01_0304 + 4136261-4136294,4136360-4136436,4136555-4136634,413... 27 7.6
01_07_0305 - 42631214-42631330,42631423-42631527,42633208-426332... 27 7.6
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 174 bits (423), Expect = 3e-44
Identities = 78/136 (57%), Positives = 101/136 (74%)
Frame = +1
Query: 1 ARGAVVAVEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPR 180
A +VA+E+P D+ V S+R +GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPR
Sbjct: 65 AARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPR 124
Query: 181 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCDTKSSHSIGLMWWVLAR 360
LLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP + K SIG ++W+LAR
Sbjct: 125 LLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLAR 184
Query: 361 EVLRLRGVLSRDQRWD 408
VL++RG + +WD
Sbjct: 185 MVLQMRGTILPGHKWD 200
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 174 bits (423), Expect = 3e-44
Identities = 78/136 (57%), Positives = 102/136 (75%)
Frame = +1
Query: 1 ARGAVVAVEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPR 180
A +VA+E+P D+ V S+R +GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPR
Sbjct: 65 AARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPR 124
Query: 181 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCDTKSSHSIGLMWWVLAR 360
LLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP + K +SIG ++W+LAR
Sbjct: 125 LLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLAR 184
Query: 361 EVLRLRGVLSRDQRWD 408
VL++RG + +WD
Sbjct: 185 MVLQMRGTILPGHKWD 200
>08_01_0950 -
9428506-9428693,9429223-9429595,9430127-9430572,
9430654-9430785,9431129-9431236,9431428-9431533
Length = 450
Score = 28.7 bits (61), Expect = 1.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 301 IPCDTKSSHSIGLMWW 348
+P D SS+S+GL WW
Sbjct: 19 VPGDVSSSYSLGLFWW 34
>07_03_0771 -
21381276-21381461,21381583-21381733,21381823-21382060,
21382161-21382368,21382650-21382777,21382892-21383029,
21383160-21384012
Length = 633
Score = 28.3 bits (60), Expect = 2.5
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -2
Query: 255 YYWNVDI*SFSNWLMILSRVQNNQQPWFAECGLDLVSKCTRSETSSN 115
Y D+ SF ++ + Q N P+FAE DLVS R T N
Sbjct: 535 YSTKSDVFSFGILILEIVTGQRNSGPYFAEQNEDLVSLVWRHWTEGN 581
>03_02_0792 +
11236785-11237337,11237711-11238261,11238446-11238628,
11238768-11238966,11239055-11239761
Length = 730
Score = 27.5 bits (58), Expect = 4.3
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +1
Query: 97 HTGATPIAGRFTPGAFTNQIQAAFREPRLLI--VLDPAQDHQPITEASYVNIPVIALCNT 270
HT +T R TP AF + AA E R+ + + ++ EA Y +I V + +
Sbjct: 270 HTLSTGETVRVTPAAFDSVTPAAIDETRVAVAAIRQKSEFSDVRVEAQYRHIEVFDMRSP 329
Query: 271 DSPLR 285
+ P++
Sbjct: 330 EQPMQ 334
>04_01_0304 +
4136261-4136294,4136360-4136436,4136555-4136634,
4137244-4137310,4137975-4138166,4138763-4139059
Length = 248
Score = 26.6 bits (56), Expect = 7.6
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 141 IY*PDPSRIPRTKAV-DCFGPCSGSSTNY*SFICQ 242
+Y P+PS IPR A+ C PC G+ ++ S C+
Sbjct: 132 LYAPNPSLIPRVPALRPCHKPC-GAPPSHGSNTCE 165
>01_07_0305 -
42631214-42631330,42631423-42631527,42633208-42633216,
42635198-42636142,42636349-42636450,42637210-42637302
Length = 456
Score = 26.6 bits (56), Expect = 7.6
Identities = 18/65 (27%), Positives = 26/65 (40%)
Frame = +1
Query: 7 GAVVAVEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLL 186
G VAV + + RA G RA+ + A A + R PG + + P
Sbjct: 141 GGAVAVGEVVRAARVGRRAAGPRALERLAHRRAARHVGARHGPGRRVQRRRLWEAPPARR 200
Query: 187 IVLDP 201
+VL P
Sbjct: 201 VVLRP 205
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,733,922
Number of Sequences: 37544
Number of extensions: 196331
Number of successful extensions: 495
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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