Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_B08
         (277 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   0.49 
SPAC688.02c |mis14||kinetochore protein Mis14 |Schizosaccharomyc...    25   2.0  
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch...    24   3.5  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      24   4.6  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    23   6.1  
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    23   8.0  
SPAC1071.09c |||DNAJ domain protein, DNAJC9 family|Schizosacchar...    23   8.0  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.1 bits (57), Expect = 0.49
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 158  DQYNEDNVKEDEADQAGPAGADEGE 232
            D  N  N+ EDEAD+ G     +G+
Sbjct: 4348 DSMNSTNIAEDEADEVGDKQLQDGQ 4372


>SPAC688.02c |mis14||kinetochore protein Mis14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 210

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 119 KNTSSSAFRKIDIDQYNEDNVK 184
           + TS++ FRK DID+Y +   K
Sbjct: 170 EQTSTTVFRKEDIDRYEQTIAK 191


>SPBC1289.02c |uap2||U2 snRNP-associated protein
           Uap2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 221 DEGEVCVLLNRGRYID 268
           +E E CV L +GRY D
Sbjct: 308 EEAEACVRLMQGRYFD 323


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 23  PYSCQTIESFCAKYLFTEVSLFYFLY 100
           PY    +  FC  + F+  S F FL+
Sbjct: 99  PYDSNVVPFFCFFFYFSLFSFFSFLF 124


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 20  TPYSCQTIESFCAKYLFTEVSL 85
           TP++    E+FC  Y+F E  +
Sbjct: 512 TPHTEDLTENFCTYYMFDETPI 533


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 116 AKNTSSSAFRKIDIDQYNEDNVKEDEADQAGP 211
           +K T S    ++   + NEDN  + +AD  GP
Sbjct: 474 SKPTPSPPAEQLTDQKQNEDNEDKVKADSNGP 505


>SPAC1071.09c |||DNAJ domain protein, DNAJC9
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 137 AFRKIDIDQYNEDNVKEDEADQ 202
           +F K+DID Y+   V++D +D+
Sbjct: 24  SFIKMDIDPYSVLGVEKDASDE 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 917,116
Number of Sequences: 5004
Number of extensions: 13555
Number of successful extensions: 36
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 61717020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)