Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_B08
(277 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1567 - 27772815-27773302,27773471-27773561,27773641-277739... 28 0.93
02_05_0740 - 31404004-31404180,31404365-31405261,31405351-314059... 27 1.6
08_01_0540 + 4691929-4692014,4692915-4693125,4693756-4693885,469... 27 2.1
09_04_0435 - 17545879-17546605,17546721-17546782,17547123-175473... 27 2.8
09_04_0564 + 18565583-18566449,18569662-18570123 26 3.7
09_06_0048 + 20477076-20478547,20478643-20478722,20478880-204788... 26 5.0
05_05_0263 - 23673014-23673697,23673772-23674188 26 5.0
05_05_0261 + 23663639-23664805 26 5.0
06_01_0320 - 2320317-2320336,2320791-2320902,2321092-2321236,232... 25 6.5
08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,535... 25 8.7
06_01_0414 + 2948868-2948998,2949136-2949202,2949442-2949531,295... 25 8.7
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917... 25 8.7
>07_03_1567 -
27772815-27773302,27773471-27773561,27773641-27773988,
27774929-27775110,27775191-27775368,27775453-27775605,
27775993-27776232,27776369-27776449,27776485-27776730,
27777151-27777240,27777536-27777778,27778365-27778529,
27779017-27779080,27779162-27779286,27779383-27779476,
27779647-27779714,27779798-27779989,27780618-27780752,
27780847-27780934,27781014-27781107,27781484-27781547,
27781657-27781708,27781911-27782014,27782099-27782158,
27782687-27782770,27782892-27783125,27783442-27783864,
27784675-27784736,27784867-27785521
Length = 1700
Score = 28.3 bits (60), Expect = 0.93
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Frame = +2
Query: 119 KNTSSSAFRKIDIDQYNEDNVKE--DEADQAGPAGAD---EGEVCVLLNRGRYIDA 271
K T +A+ D D+YN++N E D+AD+ P D E + ++ +++D+
Sbjct: 190 KPTKYNAYEDEDDDEYNDENDDEDDDDADEDDPDDVDFEPESDTEKAADKDKFVDS 245
>02_05_0740 -
31404004-31404180,31404365-31405261,31405351-31405978,
31405997-31406468,31406575-31407052
Length = 883
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +2
Query: 119 KNTSSSAFRKIDIDQYNEDNVKEDEADQAGPAGADEGE 232
K +SSS+ ++++ +E+ +E+ ++ G GADE E
Sbjct: 224 KPSSSSSDDDVEVEDVDEEIGEENAEEEEGEEGADEEE 261
>08_01_0540 +
4691929-4692014,4692915-4693125,4693756-4693885,
4695422-4696072,4696179-4696395,4697040-4697111,
4697167-4697257,4697367-4698363,4698914-4699044,
4699584-4699802,4700110-4700805,4700912-4701121,
4701606-4701710
Length = 1271
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +2
Query: 110 IMAKNTSSSAFRKIDIDQYNEDNVKEDEADQAGPAGADEGE 232
I + S F +D D+ + + D+ D+A P ++GE
Sbjct: 498 IQKQRIQQSKFMSVDSDRLKAEALNLDDDDEAAPVADNKGE 538
>09_04_0435 -
17545879-17546605,17546721-17546782,17547123-17547335,
17547506-17547590,17547904-17548061,17548174-17548294,
17548765-17548927,17548973-17549097,17550800-17550888,
17550970-17551636,17552671-17552717,17553506-17553862
Length = 937
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +2
Query: 155 IDQYNEDNVKEDEADQAGPAGADEGEVCVLL--NRGRYIDALR 277
+DQ E + QAG G DEG+V N+G++ D+ R
Sbjct: 848 VDQAAEVEMLHQHQHQAGRGGWDEGDVMPFFYSNQGKHHDSSR 890
>09_04_0564 + 18565583-18566449,18569662-18570123
Length = 442
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 128 SSSAFRKIDIDQYNEDNVKEDEADQAGPAGADEGE 232
SS+A R+ + +E+ EDEA++AG A D+G+
Sbjct: 201 SSAAGRRSSTARRDEE---EDEAEEAGGASRDDGD 232
>09_06_0048 +
20477076-20478547,20478643-20478722,20478880-20478893,
20480164-20481199,20481275-20481402,20481673-20481732,
20481774-20481878,20481971-20482055,20482315-20482470,
20482562-20482831,20482877-20483671,20483844-20483903,
20484062-20485134
Length = 1777
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 119 KNTSSSAFRKIDIDQYNEDNVKEDEADQAGPAGADE 226
K ++ ++++ + DN E+EA AG GADE
Sbjct: 281 KADNADGVPEVNVVAISRDNSAENEAAAAGDDGADE 316
>05_05_0263 - 23673014-23673697,23673772-23674188
Length = 366
Score = 25.8 bits (54), Expect = 5.0
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -3
Query: 236 RLLPHPPQLAP 204
RL+PHPPQL P
Sbjct: 230 RLVPHPPQLPP 240
>05_05_0261 + 23663639-23664805
Length = 388
Score = 25.8 bits (54), Expect = 5.0
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -3
Query: 236 RLLPHPPQLAP 204
RL+PHPPQL P
Sbjct: 254 RLVPHPPQLPP 264
>06_01_0320 -
2320317-2320336,2320791-2320902,2321092-2321236,
2321353-2321459,2321572-2321665,2321752-2321948,
2322311-2322382,2322504-2322618,2323060-2323176,
2323253-2323344,2323445-2323621,2323746-2323820,
2323911-2324051,2324671-2324859,2325298-2325363,
2325445-2325595,2325718-2325786,2326293-2326441,
2326526-2326657,2326756-2327081,2327167-2327203,
2327926-2327980,2328242-2328309,2328464-2328466
Length = 902
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 170 EDNVKEDEADQAGPAGADEGEVCVLLN 250
E+N E+ D+A ADE E VL+N
Sbjct: 862 EENKVEESTDEAVEVDADEPEETVLVN 888
>08_01_0609 +
5345761-5345862,5346808-5346871,5346958-5350191,
5350375-5350589,5351123-5351393,5351986-5352161,
5352287-5352394,5352821-5352930,5354291-5354393,
5354658-5354828,5354952-5355080,5355322-5355504,
5355612-5355701,5355823-5355934,5356100-5356227,
5357769-5357825,5357872-5357923,5358318-5358393,
5358860-5358950,5359046-5359224,5359563-5359681,
5359783-5359880
Length = 1955
Score = 25.0 bits (52), Expect = 8.7
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +2
Query: 113 MAKNTSSSAFRKIDIDQYNEDNVKEDEADQAGPAGADEGEVCVLLNRG 256
++++ SSS+ RK+D + ++ ED+ + G GEV +L G
Sbjct: 125 LSQDVSSSSMRKVDATDEAKLDILEDDLPRNLLNGVTMGEVDMLDEAG 172
>06_01_0414 +
2948868-2948998,2949136-2949202,2949442-2949531,
2950509-2950565,2950684-2950732,2950934-2951010,
2952776-2952815,2952909-2953003,2953174-2953341,
2953634-2953721,2954275-2954341,2954571-2954646,
2954759-2954876,2954988-2955233,2955296-2955471,
2956056-2956238,2956331-2956450,2956586-2956621
Length = 627
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = -3
Query: 113 LSIRNIKNKIMILQ*TNILHKMTQSFDNCMVSIINP 6
+++ N++N +LQ + + SF++ +V++INP
Sbjct: 498 VAVENLENVYGVLQEIDSIWIYGNSFESFLVAVINP 533
>03_05_0697 + 26888791-26888861,26890468-26890579,26891561-26891757,
26892215-26892266,26893530-26893795,26894007-26894229,
26895154-26895327,26895408-26895485,26895566-26895817,
26896138-26898204,26899477-26901322,26901474-26901574,
26902179-26902535,26902681-26902799,26903558-26903559,
26903630-26903662,26903709-26903841,26904285-26904537,
26905688-26905912,26906401-26906466,26907373-26907471,
26908528-26908545,26908546-26908893,26909878-26910354
Length = 2522
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 143 RKIDIDQYNEDNVKEDEADQAGPAGADEGEV 235
RK + ++D E+EAD+ P G +E E+
Sbjct: 2030 RKNSLQYSSDDEDVEEEADEVVPDGVEEVEL 2060
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,293,175
Number of Sequences: 37544
Number of extensions: 69918
Number of successful extensions: 250
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 268461864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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