Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_B08
         (277 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067624-1|AAC17561.1|  152|Caenorhabditis elegans Arp2/3 comple...    36   0.004
U58727-1|AAB00581.1|  358|Caenorhabditis elegans Hypothetical pr...    27   1.4  
Z81546-1|CAB04449.2|  859|Caenorhabditis elegans Hypothetical pr...    27   1.9  
U80025-2|AAD32270.3|  806|Caenorhabditis elegans Hypothetical pr...    26   3.3  
AL117202-4|CAB55095.3|  222|Caenorhabditis elegans Hypothetical ...    26   3.3  
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr...    26   4.4  
AF040653-1|ABC48248.1|  312|Caenorhabditis elegans F-box b prote...    26   4.4  
Z49128-8|CAA88960.2|  989|Caenorhabditis elegans Hypothetical pr...    25   5.8  
AL021171-6|CAA15960.2|  989|Caenorhabditis elegans Hypothetical ...    25   5.8  
AC006661-5|AAF39890.2|  488|Caenorhabditis elegans Hypothetical ...    25   5.8  
AC006661-4|ABB88208.1|  561|Caenorhabditis elegans Hypothetical ...    25   5.8  
U00033-9|AAC48293.1|  323|Caenorhabditis elegans Hypothetical pr...    25   7.7  
L14429-7|AAK93871.1|  285|Caenorhabditis elegans Coenzyme q (ubi...    25   7.7  
AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical ...    25   7.7  

>AF067624-1|AAC17561.1|  152|Caenorhabditis elegans Arp2/3 complex
           component protein 7 protein.
          Length = 152

 Score = 35.9 bits (79), Expect = 0.004
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +2

Query: 113 MAKNTSSSAFRKIDIDQYNEDNVKE-DEADQAGPAGADEGEVCVLLNRGRYIDAL 274
           M+KN  ++++RK+D+D ++ +   E DE       G DE  V   L+  R  DAL
Sbjct: 1   MSKNMQNTSYRKLDVDSFDPEQYDENDETVDTPGLGPDERAVQGFLSSNRLEDAL 55


>U58727-1|AAB00581.1|  358|Caenorhabditis elegans Hypothetical
           protein D1005.3 protein.
          Length = 358

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +2

Query: 47  SFCAKYLFTEVSLFYFLYF*SIMAKNTSSSAFRKIDIDQYNEDNVKEDEADQA 205
           SF   +  + +SLF FL+   I +    S  FRK+    Y++ N    + DQA
Sbjct: 4   SFHFSHFSSLLSLFLFLFL--IASHREHSKPFRKLIKKMYSKLNYSHQKGDQA 54


>Z81546-1|CAB04449.2|  859|Caenorhabditis elegans Hypothetical
           protein F53A2.1 protein.
          Length = 859

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +3

Query: 57  QNICLLKYHYFIFYISDR*WLKI----HQVQHFVK*I*INITKIMLKKM 191
           Q+IC LK H +  +++ R  + I     Q++HF K +   + +++LK++
Sbjct: 487 QDICNLKLHAYFQFLNKRVKINICKLQVQIEHFDKVVQFQLHRLILKEL 535


>U80025-2|AAD32270.3|  806|Caenorhabditis elegans Hypothetical
           protein F02C9.2 protein.
          Length = 806

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 78  YHYFIFYISDR*WLKIHQVQHFVK*I*INITKIMLKKMK 194
           ++ + FY  D+ W +   ++HFVK    N T+++  KMK
Sbjct: 187 FNPYRFYGMDQMWPRGFPLEHFVKHTNGNETQVLCYKMK 225


>AL117202-4|CAB55095.3|  222|Caenorhabditis elegans Hypothetical
           protein Y47D3A.5 protein.
          Length = 222

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 263 YIDLDSVRHRLLPHPPQLAP 204
           Y+DL  VR +L P PP + P
Sbjct: 32  YVDLADVRSQLPPPPPSVGP 51


>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
            ZK783.1 protein.
          Length = 2585

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +2

Query: 119  KNTSSSAFRKIDIDQYNEDNVKEDEADQAGPAGADEGE 232
            KN   +  +  DI    ED+  E    + GP G  +G+
Sbjct: 1018 KNVPKTGDKNPDITTDGEDSTSETSGGEQGPKGKSKGQ 1055


>AF040653-1|ABC48248.1|  312|Caenorhabditis elegans F-box b protein
           protein 44 protein.
          Length = 312

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 36  KRLSHFVQNICLLKYHYFIFYISDR*WLKI 125
           KR  HF+Q+IC+ K   F   +++   L+I
Sbjct: 36  KRSKHFIQDICIFKAPRFYIKLAESINLRI 65


>Z49128-8|CAA88960.2|  989|Caenorhabditis elegans Hypothetical
           protein M03C11.8 protein.
          Length = 989

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 113 MAKNTSSSAFRKIDIDQYNEDN-VKEDEADQAGPAGADEGE 232
           MAK +++S  RKI ID  +ED+ + ++E  + G     E E
Sbjct: 173 MAKRSAASK-RKIVIDDESEDDFINDEEISEKGSGKGSEKE 212


>AL021171-6|CAA15960.2|  989|Caenorhabditis elegans Hypothetical
           protein M03C11.8 protein.
          Length = 989

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 113 MAKNTSSSAFRKIDIDQYNEDN-VKEDEADQAGPAGADEGE 232
           MAK +++S  RKI ID  +ED+ + ++E  + G     E E
Sbjct: 173 MAKRSAASK-RKIVIDDESEDDFINDEEISEKGSGKGSEKE 212


>AC006661-5|AAF39890.2|  488|Caenorhabditis elegans Hypothetical
           protein H20J04.4a protein.
          Length = 488

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +2

Query: 122 NTSSSAFRKIDIDQYNEDNVKEDEADQAGPAGADEGE 232
           +TSS + +  + +++ +    EDE D+A     +E E
Sbjct: 26  STSSKSVKNEEFEEFEDGEDVEDEEDEASDEDEEESE 62


>AC006661-4|ABB88208.1|  561|Caenorhabditis elegans Hypothetical
           protein H20J04.4b protein.
          Length = 561

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +2

Query: 122 NTSSSAFRKIDIDQYNEDNVKEDEADQAGPAGADEGE 232
           +TSS + +  + +++ +    EDE D+A     +E E
Sbjct: 26  STSSKSVKNEEFEEFEDGEDVEDEEDEASDEDEEESE 62


>U00033-9|AAC48293.1|  323|Caenorhabditis elegans Hypothetical
           protein F37C12.1 protein.
          Length = 323

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 143 RKIDIDQYNEDNVKEDEADQAGPAGA 220
           R+I  D+ N D   ED+ D  GP+ +
Sbjct: 212 RRIKDDEDNSDGADEDDKDIPGPSAS 237


>L14429-7|AAK93871.1|  285|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 5 protein.
          Length = 285

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +2

Query: 113 MAKNTSSSAFRKIDIDQYNEDNVKEDEADQA--GPAGADEGE 232
           M K T+   FR+  ++Q N DN + +   +   G    DE E
Sbjct: 11  MRKPTNVGNFRQFSVNQVNSDNKRSEPGKKTHFGFTDVDEAE 52


>AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical
           protein Y81G3A.3 protein.
          Length = 1696

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +2

Query: 146 KIDIDQYNEDNVKEDEADQAGPAGADEGEVCVLLN 250
           +ID D  +E+ V+++E+D +     D+GE  V LN
Sbjct: 680 EIDWDAESEE-VEDEESDDSDEEDEDDGERLVQLN 713


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,006,203
Number of Sequences: 27780
Number of extensions: 73049
Number of successful extensions: 212
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 238114316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)