Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_B07
         (331 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    75   2e-15
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    71   3e-14
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    67   6e-13
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    29   0.18 
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    28   0.42 
SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    25   3.0  
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    25   3.0  

>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 75.4 bits (177), Expect = 2e-15
 Identities = 33/55 (60%), Positives = 48/55 (87%)
 Frame = +2

Query: 98  VGRQASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSSMP 262
           VG + SP+A+D+E +LS+VGIEA++E+++ +ISELNGKN+EELI AG  KLS++P
Sbjct: 12  VGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKLSTVP 66



 Score = 25.8 bits (54), Expect = 1.7
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 66  MRYVAAYLLAVXGGKR 113
           M+Y+AAYLL   GGK+
Sbjct: 1   MKYLAAYLLLTVGGKQ 16


>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 71.3 bits (167), Expect = 3e-14
 Identities = 32/77 (41%), Positives = 50/77 (64%)
 Frame = +2

Query: 98  VGRQASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSSMPXXXXX 277
           VG + SP+A+D+E +LS+VGIEA+SE+++ +I+ELNGK+++ELI AG  KL+++P     
Sbjct: 12  VGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKLATVPTGGAA 71

Query: 278 XXXXXXXXXXXXXXXEE 328
                          EE
Sbjct: 72  SAAPAAAAGGAAPAAEE 88



 Score = 25.4 bits (53), Expect = 2.2
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 66  MRYVAAYLLAVXGGK 110
           M+Y+AAYLL   GGK
Sbjct: 1   MKYLAAYLLLTVGGK 15


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 67.3 bits (157), Expect = 6e-13
 Identities = 30/77 (38%), Positives = 49/77 (63%)
 Frame = +2

Query: 98  VGRQASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSSMPXXXXX 277
           VG + SP+A+D+E +LS+VGIE++SE+++ +I EL+GK+++ELI AG  KL+++P     
Sbjct: 12  VGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEKLATVPSGGAA 71

Query: 278 XXXXXXXXXXXXXXXEE 328
                          EE
Sbjct: 72  AAAAPAAAGGAAPAAEE 88



 Score = 25.4 bits (53), Expect = 2.2
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 66  MRYVAAYLLAVXGGK 110
           M+Y+AAYLL   GGK
Sbjct: 1   MKYLAAYLLLTVGGK 15


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 29.1 bits (62), Expect = 0.18
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +2

Query: 134 EKILSSVGIEADSEKLKKVISELNGKNVEELI 229
           E +L S G+E  S+   KV S +N K+VEE I
Sbjct: 297 ELVLLSEGVEMYSDDWAKVASHVNTKSVEECI 328


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 27.9 bits (59), Expect = 0.42
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 131  VEKILSSVGIEADSEKLKKVISELNG 208
            V++I   VG+E DSE  K  + E+ G
Sbjct: 1742 VDEIFGEVGVEKDSEDYKSNVKEIKG 1767


>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 526

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +2

Query: 113 SPAAADVEKILS--SVGIEADSEKLKKVISELNGKNVEELIEAGRGKLS 253
           SP++  +  ++   + G   DSEK+K  +  +  K+ ++  E   GK S
Sbjct: 444 SPSSKPISTLIQEKNFGTIGDSEKIKACVESVLSKHSKQFEELKNGKTS 492


>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 128 DVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSS 256
           DV++ LS +  EA    +       NG+ +EE++ A   KL +
Sbjct: 56  DVDQ-LSEIAAEAGVHAMPSFFLYKNGEKIEEIVGANPAKLEA 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 917,085
Number of Sequences: 5004
Number of extensions: 12534
Number of successful extensions: 44
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)