Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_B07
(331 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161 62 1e-10
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129 53 6e-08
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764... 50 3e-07
07_01_1001 - 8460467-8460799 42 9e-05
07_03_0321 + 16757414-16757743 42 2e-04
01_06_0098 - 26416768-26416998 34 0.031
04_03_0630 - 18182681-18182931,18183397-18183463,18184899-181849... 32 0.13
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 29 0.67
10_08_0183 - 15522241-15523866 29 1.2
09_04_0154 - 15180921-15181811,15181986-15182070,15182205-15182419 28 1.5
02_02_0331 + 9017291-9019084,9019205-9019402,9020014-9020184,902... 28 2.0
11_06_0388 + 23048576-23051546,23051830-23052371,23052444-230525... 27 3.6
08_02_0909 - 22515326-22515418,22515992-22516150,22516583-225166... 27 3.6
11_06_0584 - 25220371-25222917 27 4.7
02_05_0440 - 29035974-29036356,29037977-29038133,29038260-290388... 27 4.7
07_03_1069 + 23743031-23744062 26 6.2
03_03_0150 + 14872035-14872472,14874895-14875725 26 6.2
10_08_0182 + 15513693-15515273 26 8.3
>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
Length = 113
Score = 61.7 bits (143), Expect = 1e-10
Identities = 27/55 (49%), Positives = 42/55 (76%)
Frame = +2
Query: 98 VGRQASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSSMP 262
+G SP+A D++ IL SVG+EA+ E+L+ ++SEL GK++ E+I AGR K +S+P
Sbjct: 12 LGGNTSPSADDIKNILESVGVEANDERLEFLLSELEGKDITEVIAAGREKFASVP 66
>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
Length = 114
Score = 52.8 bits (121), Expect = 6e-08
Identities = 23/51 (45%), Positives = 37/51 (72%)
Frame = +2
Query: 110 ASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSSMP 262
+SP A D+ IL SVG E D+ K++ ++S+++GK++ ELI GR K +S+P
Sbjct: 16 SSPTAEDLTTILESVGCEIDNAKMELLLSQVSGKDITELIACGREKFASVP 66
>02_04_0074 -
19474786-19474812,19475174-19475400,19476362-19476496,
19478662-19479193
Length = 306
Score = 50.4 bits (115), Expect = 3e-07
Identities = 22/50 (44%), Positives = 36/50 (72%)
Frame = +2
Query: 113 SPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSSMP 262
+P+A D+ IL SVG E D K++ ++S+L GK++ E+I +GR K +S+P
Sbjct: 210 NPSAEDLTTILESVGAEVDHGKMELLLSQLAGKDITEIIASGREKFASVP 259
>07_01_1001 - 8460467-8460799
Length = 110
Score = 42.3 bits (95), Expect = 9e-05
Identities = 19/52 (36%), Positives = 31/52 (59%)
Frame = +2
Query: 98 VGRQASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLS 253
+G ASP DV IL +VG + D +KL + ++ GK++ E++ AG L+
Sbjct: 12 IGGNASPTKDDVRAILGAVGADVDEDKLGYLFDQVAGKDLSEILAAGSEMLA 63
>07_03_0321 + 16757414-16757743
Length = 109
Score = 41.5 bits (93), Expect = 2e-04
Identities = 19/52 (36%), Positives = 31/52 (59%)
Frame = +2
Query: 98 VGRQASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLS 253
+G ASP DV IL +VG + D +KL + ++ GK++ E++ AG L+
Sbjct: 12 IGGNASPTKDDVRAILGAVGADIDEDKLGYLFDQVAGKDLAEILAAGSEMLA 63
>01_06_0098 - 26416768-26416998
Length = 76
Score = 33.9 bits (74), Expect = 0.031
Identities = 20/47 (42%), Positives = 26/47 (55%)
Frame = +2
Query: 74 RGRVFTRRVGRQASPAAADVEKILSSVGIEADSEKLKKVISELNGKN 214
RG T R G P A V KI+ +V IEADS + K ++ L GK+
Sbjct: 4 RGADETTRHGPPPPPPA--VVKIIETVHIEADSAEFKSIVQRLTGKD 48
>04_03_0630 -
18182681-18182931,18183397-18183463,18184899-18184964,
18185057-18185178,18185263-18185425,18186082-18186329,
18186418-18186751,18186857-18187000,18187079-18187144
Length = 486
Score = 31.9 bits (69), Expect = 0.13
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 95 RVGRQASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAG 238
R+GR ASPAAA+++ + + I A + V +E+ + +E + G
Sbjct: 51 RIGRPASPAAAEMDTVTTMEAINAKIVSMDIVRAEIKAVDAQESLGGG 98
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 29.5 bits (63), Expect = 0.67
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +2
Query: 95 RVGRQASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVE 220
R G+ SPA D+ L+ G E DS + ++S+LNG E
Sbjct: 44 RGGQGDSPATQDLLSKLNGSGGEGDSPATQDLLSKLNGSGGE 85
>10_08_0183 - 15522241-15523866
Length = 541
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = +2
Query: 86 FTRRVGRQASPAAADVEKILSSVGIEADSEKLKKVIS 196
+T V + A AAAD+ K+L V I+ + +KL+++++
Sbjct: 246 YTALVAKNAKQAAADMSKVL-QVEIQEEQDKLEQMVT 281
>09_04_0154 - 15180921-15181811,15181986-15182070,15182205-15182419
Length = 396
Score = 28.3 bits (60), Expect = 1.5
Identities = 17/32 (53%), Positives = 20/32 (62%)
Frame = +2
Query: 44 SCLSDLKNALRGRVFTRRVGRQASPAAADVEK 139
+C SDL+N LRGR +V QA P AA EK
Sbjct: 247 TCESDLQNHLRGRRHQLKV--QALPEAAKQEK 276
>02_02_0331 +
9017291-9019084,9019205-9019402,9020014-9020184,
9020292-9020435,9020552-9020764,9020859-9021929,
9022365-9022391
Length = 1205
Score = 27.9 bits (59), Expect = 2.0
Identities = 17/66 (25%), Positives = 29/66 (43%)
Frame = +2
Query: 35 IHVSCLSDLKNALRGRVFTRRVGRQASPAAADVEKILSSVGIEADSEKLKKVISELNGKN 214
+H LS+ N L+ + R SPAAAD +++ +S +S + G+
Sbjct: 790 LHDEALSENSNELQQCTTSERSSTMISPAAAD-NSMITMAATSVESSVSADKVSPVEGQV 848
Query: 215 VEELIE 232
E +E
Sbjct: 849 TEAAVE 854
>11_06_0388 +
23048576-23051546,23051830-23052371,23052444-23052517,
23053006-23053090,23053281-23053367,23053585-23053657,
23053882-23053925,23054041-23054169,23054301-23054402,
23054529-23054585
Length = 1387
Score = 27.1 bits (57), Expect = 3.6
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 110 ASPAAADVEKILSSVGIEADSEK-LKKVISELNGKNVEELIEAGRGKLSSMP 262
+ P EKI+S IEA SEK + + I K + E IEA K+ S P
Sbjct: 392 SEPIDTQTEKIISD-PIEAQSEKIISEPIDAQTEKIISEPIEAQSEKIISEP 442
>08_02_0909 -
22515326-22515418,22515992-22516150,22516583-22516658,
22517980-22518141,22518826-22519259,22519723-22521414
Length = 871
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +2
Query: 137 KILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSS 256
++LS GI++ S K + ++G N++EL AG +L+S
Sbjct: 674 EVLSMSGIQSVSNKFVNELIPVHGSNLKELAFAGCLQLTS 713
>11_06_0584 - 25220371-25222917
Length = 848
Score = 26.6 bits (56), Expect = 4.7
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = +2
Query: 14 TNILFSAIHVSCLSDLKNALRGRVFTRRVGRQASPAAADVEKILSSVGIEADSEKLKKV 190
TN+ +A+ L++LK+ L GR+F + A+A + +L I ++E L+ +
Sbjct: 520 TNVRGAAMRDIFLNELKHLLVGRIFIPDAAAGDNEASALLSTVLMPPKISKNTEILRHI 578
>02_05_0440 -
29035974-29036356,29037977-29038133,29038260-29038824,
29038866-29039191
Length = 476
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 87 LLAVXGGKRPQLLLMSKRSSALWGLR 164
L+A GKRP LL+ + SA W R
Sbjct: 134 LVAAVVGKRPSQLLLCRPGSASWSCR 159
>07_03_1069 + 23743031-23744062
Length = 343
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 98 VGRQASPAAADVEKILSSVGIEADSEKLKKVISELNGK 211
VGR + AAA K V E +S+ L V+S+ + +
Sbjct: 194 VGRTTAAAAAAAPKTAEEVEAELESDSLPAVVSDSSNR 231
>03_03_0150 + 14872035-14872472,14874895-14875725
Length = 422
Score = 26.2 bits (55), Expect = 6.2
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +2
Query: 5 EGKTNILFSAIHVSCLSDLKNALRGRVFTRRVGRQASPAAADVEKILSSVGIEADSEKLK 184
EG +L A V L D AL RVG + +PA A E + +A+ + +
Sbjct: 309 EGPVAVLSEAKRVVGLGDAGGALGVGAAEARVGDEGAPALAHGEAAGGAARRQAEQDVPE 368
Query: 185 KVISEL 202
+V+ ++
Sbjct: 369 QVVRQM 374
>10_08_0182 + 15513693-15515273
Length = 526
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 86 FTRRVGRQASPAAADVEKILSSVGIEADSEKLKKV 190
+T + R A AAAD+ K+L + I+ D+++ + V
Sbjct: 242 YTALIARNAKQAAADMSKVLDT-EIQEDADRAEAV 275
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,449,159
Number of Sequences: 37544
Number of extensions: 95954
Number of successful extensions: 284
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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