Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_B04
(397 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 140 4e-34
03_01_0547 + 4093196-4093657,4094267-4095148 140 4e-34
03_01_0544 + 4082528-4082989,4083585-4084466 140 4e-34
03_01_0543 + 4076981-4077442,4078145-4079026 140 4e-34
10_08_1038 - 22485394-22485960,22486712-22487197 29 1.8
11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,361... 28 2.4
09_02_0484 + 9804351-9805203,9806204-9806760,9807243-9807959 28 2.4
06_03_1311 - 29241884-29242054,29242802-29242879,29242968-292430... 28 3.1
02_04_0612 + 24370446-24373044,24373135-24373541 28 3.1
11_06_0596 + 25385744-25388890 27 4.1
11_04_0242 - 15273774-15274043,15274131-15274235 27 4.1
11_01_0461 + 3569700-3572373,3572477-3572847 27 4.1
11_03_0079 + 9669666-9669728,9670779-9672545 27 5.5
03_05_0010 + 19622430-19622512,19622539-19623082,19623361-196237... 27 5.5
11_01_0169 - 1365984-1366681,1368669-1368745,1369133-1369257,136... 27 7.2
08_01_0851 + 8383043-8383301,8384654-8384824,8384907-8386420 27 7.2
01_06_0610 - 30587269-30587717,30587996-30588212,30588363-305884... 27 7.2
01_01_0566 - 4166511-4166632,4167302-4167375,4167509-4167648,416... 27 7.2
01_01_0218 + 1856104-1856700,1856814-1857452 27 7.2
03_05_0824 + 27980191-27980243,27980633-27980671,27980974-279820... 26 9.6
02_05_0623 + 30446420-30446525,30446635-30446715,30446811-304469... 26 9.6
01_01_0456 - 3385907-3386174,3386283-3386470,3386542-3387027,338... 26 9.6
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 140 bits (339), Expect = 4e-34
Identities = 71/131 (54%), Positives = 91/131 (69%)
Frame = +2
Query: 5 EEAVPGDNVGFNVKNVSVKELRPXPXGGXFWGGXYVLXXEIRKTTHPG*AADFTAQVIVL 184
+EA+PGDNVGFNVKNV+VK+L+ YV K AA FT+QVI++
Sbjct: 288 QEALPGDNVGFNVKNVAVKDLKRG----------YVASNS--KDDPAKEAASFTSQVIIM 335
Query: 185 NHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPS 364
NHPGQI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+
Sbjct: 336 NHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT 395
Query: 365 QKPLCVESFQE 397
KP+ VE+F E
Sbjct: 396 -KPMVVETFSE 405
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 140 bits (339), Expect = 4e-34
Identities = 71/131 (54%), Positives = 91/131 (69%)
Frame = +2
Query: 5 EEAVPGDNVGFNVKNVSVKELRPXPXGGXFWGGXYVLXXEIRKTTHPG*AADFTAQVIVL 184
+EA+PGDNVGFNVKNV+VK+L+ YV K AA FT+QVI++
Sbjct: 288 QEALPGDNVGFNVKNVAVKDLKRG----------YVASNS--KDDPAKEAASFTSQVIIM 335
Query: 185 NHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPS 364
NHPGQI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+
Sbjct: 336 NHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT 395
Query: 365 QKPLCVESFQE 397
KP+ VE+F E
Sbjct: 396 -KPMVVETFSE 405
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 140 bits (339), Expect = 4e-34
Identities = 71/131 (54%), Positives = 91/131 (69%)
Frame = +2
Query: 5 EEAVPGDNVGFNVKNVSVKELRPXPXGGXFWGGXYVLXXEIRKTTHPG*AADFTAQVIVL 184
+EA+PGDNVGFNVKNV+VK+L+ YV K AA FT+QVI++
Sbjct: 288 QEALPGDNVGFNVKNVAVKDLKRG----------YVASNS--KDDPAKEAASFTSQVIIM 335
Query: 185 NHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPS 364
NHPGQI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+
Sbjct: 336 NHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT 395
Query: 365 QKPLCVESFQE 397
KP+ VE+F E
Sbjct: 396 -KPMVVETFSE 405
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 140 bits (339), Expect = 4e-34
Identities = 71/131 (54%), Positives = 91/131 (69%)
Frame = +2
Query: 5 EEAVPGDNVGFNVKNVSVKELRPXPXGGXFWGGXYVLXXEIRKTTHPG*AADFTAQVIVL 184
+EA+PGDNVGFNVKNV+VK+L+ YV K AA FT+QVI++
Sbjct: 288 QEALPGDNVGFNVKNVAVKDLKRG----------YVASNS--KDDPAKEAASFTSQVIIM 335
Query: 185 NHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPS 364
NHPGQI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+
Sbjct: 336 NHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT 395
Query: 365 QKPLCVESFQE 397
KP+ VE+F E
Sbjct: 396 -KPMVVETFSE 405
>10_08_1038 - 22485394-22485960,22486712-22487197
Length = 350
Score = 28.7 bits (61), Expect = 1.8
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Frame = +1
Query: 97 GGXXRFAXGDSKNNPPRVSCRLHSASHCAKS--PRSNIKRIHTCIGLPHSPHSL 252
G G K +V S+S CA + P NI RIH IGL SP L
Sbjct: 73 GSGEALLRGQVKTLLQKVHHDASSSSSCAAAAPPSPNILRIHAPIGLARSPAHL 126
>11_01_0466 +
3607947-3610608,3610725-3611018,3611494-3611895,
3611984-3612217,3614113-3614138,3614446-3614633,
3615707-3617670,3617938-3618423,3618527-3618894
Length = 2207
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -2
Query: 396 SWKDSTHRGFWEGTRLTMAASPDLMDLGLSSVDL 295
SW DS H WEG + P + + LS+ +L
Sbjct: 53 SWNDSNHLCSWEGVSCSSKNPPRVTSIDLSNQNL 86
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 396 SWKDSTHRGFWEGTRLTMAASPDLMDLGLSS 304
SW DSTH WEG ++ + L LS+
Sbjct: 1336 SWNDSTHFCSWEGVSCSLRYPRRVTSLDLSN 1366
>09_02_0484 + 9804351-9805203,9806204-9806760,9807243-9807959
Length = 708
Score = 28.3 bits (60), Expect = 2.4
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = -2
Query: 339 ASPDLMDLGLSSVDLPVRRSTFSL 268
A+ DLM G+S V+LPVRR+ F++
Sbjct: 580 ATLDLMYSGISMVNLPVRRNHFAV 603
>06_03_1311 -
29241884-29242054,29242802-29242879,29242968-29243049,
29243141-29243212,29243316-29243437,29243541-29243596,
29244264-29244333,29244435-29244518,29244599-29244667,
29244855-29244928,29245014-29245125,29245220-29245510
Length = 426
Score = 27.9 bits (59), Expect = 3.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 261 PKSKRKSTVVLVNQQRTTLNPLNLVMP 341
P+ R+S + Q TT++P NLV+P
Sbjct: 103 PRRNRRSPALRAAFQETTISPANLVLP 129
>02_04_0612 + 24370446-24373044,24373135-24373541
Length = 1001
Score = 27.9 bits (59), Expect = 3.1
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -2
Query: 396 SWKDSTHRGFWEGTRLTMAASPDLMDLGLSSVDL--PVRRSTFSLISANL 253
+W STH W+G + T +M L LSS L +R S +L N+
Sbjct: 58 TWNTSTHFCRWQGVKCTSTGPWRVMALNLSSQSLTGQIRSSLGNLSFLNI 107
>11_06_0596 + 25385744-25388890
Length = 1048
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 264 KSKRKSTVVLVNQQRTTLNPLNLVMPPLSTW 356
K+ K +N+ TTL L++ M P+S+W
Sbjct: 832 KANLKDLFAQINKLHTTLRSLSIRMKPVSSW 862
>11_04_0242 - 15273774-15274043,15274131-15274235
Length = 124
Score = 27.5 bits (58), Expect = 4.1
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -3
Query: 260 QICRLCGLCGNPIQVCI 210
QIC +C CG P VCI
Sbjct: 74 QICAVCTCCGGPHGVCI 90
>11_01_0461 + 3569700-3572373,3572477-3572847
Length = 1014
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 396 SWKDSTHRGFWEGTRLTMAASPDLMDLGLSSVDL 295
SW DS H WEG + + A ++ L LS L
Sbjct: 52 SWNDSNHVCSWEGVKCRVKAPHRVIYLNLSGQGL 85
>11_03_0079 + 9669666-9669728,9670779-9672545
Length = 609
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +2
Query: 161 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVD 283
FTA+ +H Q++N VLDC AH+ CK+ + E ++
Sbjct: 572 FTAENRSKSH--QVNN-VLAVLDCLQAHMECKYDMLTESLE 609
>03_05_0010 +
19622430-19622512,19622539-19623082,19623361-19623767,
19623831-19624167,19624290-19624508,19625522-19625826,
19626128-19626287,19626422-19626547
Length = 726
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +2
Query: 266 IKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPS 364
IKE + R GKST D P +G I PS
Sbjct: 207 IKEAITTRGGKSTRDPPYPNPTGTNGIAREAPS 239
>11_01_0169 -
1365984-1366681,1368669-1368745,1369133-1369257,
1369338-1369426,1370041-1370126,1370705-1370970
Length = 446
Score = 26.6 bits (56), Expect = 7.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 364 GGNQVDNGGITRFNGF 317
GGN +DN G+T +N F
Sbjct: 379 GGNSMDNSGVTEYNLF 394
>08_01_0851 + 8383043-8383301,8384654-8384824,8384907-8386420
Length = 647
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 161 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVD 283
FTA+ +H Q++N +LDC AH+ CK+ + E ++
Sbjct: 610 FTAENRSKSH--QVNN-VLAILDCLQAHMECKYDMLTESLE 647
>01_06_0610 -
30587269-30587717,30587996-30588212,30588363-30588482,
30589092-30589202,30589300-30589374,30589940-30590031,
30590121-30590302,30590479-30590570,30591179-30591283,
30591374-30591451,30591553-30591705
Length = 557
Score = 26.6 bits (56), Expect = 7.2
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +2
Query: 269 KEKVDRRTGKSTEDNPKS---IKSGDAAIVNLVPSQKPLCVESFQE 397
KE DR +NP S + GDA + ++PSQ P V+SF E
Sbjct: 242 KENSDRDVRHFELENPSSGITYQVGDA--LEILPSQSPSAVDSFIE 285
>01_01_0566 -
4166511-4166632,4167302-4167375,4167509-4167648,
4167731-4167802,4167915-4167984,4168112-4168185,
4168316-4168487,4168887-4168976,4169151-4169175,
4169273-4169432,4169855-4170265,4170443-4170559
Length = 508
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 290 TGKSTEDNPKSIKSGDAAIVNLVPSQKPL 376
TG+ N +SI S D ++N+ Q+PL
Sbjct: 474 TGEGNASNQQSILSNDKLLLNMQKGQQPL 502
>01_01_0218 + 1856104-1856700,1856814-1857452
Length = 411
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +3
Query: 309 TTLNPLNLVMPPLSTWFP-PKSPCVWSPS 392
++L P + MP + P P++PCVW PS
Sbjct: 52 SSLAPSSTPMPTPTAPSPSPETPCVWPPS 80
>03_05_0824 +
27980191-27980243,27980633-27980671,27980974-27982023,
27983097-27983262,27983439-27983549,27983637-27983688,
27984691-27984859,27985604-27985883
Length = 639
Score = 26.2 bits (55), Expect = 9.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 182 LNHPGQISNGYTPVLDCHTAHIACK 256
L+ P +ISNG TPV D ++ C+
Sbjct: 271 LHRPRRISNGTTPVFDDNSGSHLCQ 295
>02_05_0623 +
30446420-30446525,30446635-30446715,30446811-30446987,
30447629-30447799,30448239-30448448,30448634-30448722,
30449318-30450010
Length = 508
Score = 26.2 bits (55), Expect = 9.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 299 STEDNPKSIKSGDAAIVNLVPSQKPL 376
STED P++ A+I ++ P QKPL
Sbjct: 275 STEDEPETQTPLKASIASIPPYQKPL 300
>01_01_0456 -
3385907-3386174,3386283-3386470,3386542-3387027,
3387123-3387184,3387269-3387429,3388215-3388290,
3388382-3388471,3388591-3388659,3389498-3389756
Length = 552
Score = 26.2 bits (55), Expect = 9.6
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 6 RKLYPVTMLVSTSKTYLSRNCAP 74
RKL+ T+L+ T+ T+ S C P
Sbjct: 165 RKLFHTTLLLETNTTFFSPYCQP 187
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,524,843
Number of Sequences: 37544
Number of extensions: 294404
Number of successful extensions: 684
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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