Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_B03
(447 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0626 - 35169352-35169546,35169736-35169948,35170102-351702... 182 9e-47
07_01_1055 - 9253936-9254130,9254271-9254483,9254588-9254758,925... 182 1e-46
02_04_0362 - 22366668-22367516 178 2e-45
04_04_0143 - 23091613-23092467 173 5e-44
03_06_0437 - 33912326-33912520,33912870-33912998,33913147-339133... 143 7e-35
03_06_0427 - 33857008-33857137,33857224-33857258,33857966-338580... 58 3e-09
10_08_0298 - 16603417-16603775,16604015-16604203,16604420-166045... 34 0.060
03_01_0069 + 549787-549791,550033-550303,550405-552201 31 0.32
09_03_0032 + 11742279-11742398,11743318-11743359,11743394-117435... 31 0.56
05_07_0324 - 29266764-29267131,29267231-29267419,29267552-292676... 29 1.3
02_02_0280 - 8515894-8517309 29 2.3
12_02_0090 + 13493311-13494180 28 3.0
08_02_0583 + 19006495-19006683,19006954-19007060,19007124-190072... 28 3.9
09_01_0081 - 1173593-1173790,1173949-1174035,1174122-1174349 27 6.9
07_03_0912 + 22544144-22545589 27 6.9
12_02_0134 - 14071190-14071435,14071800-14071988,14072114-140721... 27 9.1
05_01_0133 + 895107-895280,895960-896271,896815-897081,897161-89... 27 9.1
04_02_0017 - 8572400-8572732,8572818-8572919,8573138-8573230,857... 27 9.1
>03_06_0626 -
35169352-35169546,35169736-35169948,35170102-35170272,
35170826-35170942,35171078-35171233
Length = 283
Score = 182 bits (444), Expect = 9e-47
Identities = 87/149 (58%), Positives = 119/149 (79%)
Frame = +1
Query: 1 ARGRNVPTVTGSKDLQNVNITLRILFRPVPDQLPKIYTILGVDYDERVLPSITAEVLKAV 180
AR V + +GS+DLQ V I LR+L RP+P++LP IY LG +++ERVLPSI E LKAV
Sbjct: 75 ARPNLVESTSGSRDLQMVRIGLRVLTRPLPEKLPTIYRSLGENFNERVLPSIIHETLKAV 134
Query: 181 VAQFDAGELITQREVVSQKVSETLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQ 360
VAQ++A +LITQRE VS+++ + LTERA+ F + LDD+SIT L+FGKEFT A+E KQVA
Sbjct: 135 VAQYNASQLITQREAVSREIRKILTERASNFNIALDDVSITSLSFGKEFTHAIEAKQVAA 194
Query: 361 QDAEKARFLVEKAEQQKKAGVIAAEGDAQ 447
Q+AE+A+F+VEKAEQ K++ +I A+G+A+
Sbjct: 195 QEAERAKFIVEKAEQDKRSAIIRAQGEAK 223
>07_01_1055 -
9253936-9254130,9254271-9254483,9254588-9254758,
9255743-9255859,9257021-9257186,9258885-9258934,
9259095-9259268
Length = 361
Score = 182 bits (443), Expect = 1e-46
Identities = 87/149 (58%), Positives = 118/149 (79%)
Frame = +1
Query: 1 ARGRNVPTVTGSKDLQNVNITLRILFRPVPDQLPKIYTILGVDYDERVLPSITAEVLKAV 180
AR V + +GS+DLQ V I LR+L RP+P++LP IY LG +++ERVLPSI E LKAV
Sbjct: 153 ARPNLVESTSGSRDLQMVKIGLRVLTRPMPEKLPTIYRTLGENFNERVLPSIIHETLKAV 212
Query: 181 VAQFDAGELITQREVVSQKVSETLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQ 360
VAQ++A +LITQRE VS+++ + LTERA F + LDD+SIT L+FGKEFT A+E KQVA
Sbjct: 213 VAQYNASQLITQRETVSREIRKILTERARNFNIALDDVSITSLSFGKEFTHAIEAKQVAA 272
Query: 361 QDAEKARFLVEKAEQQKKAGVIAAEGDAQ 447
Q+AE+A+F+VEKAEQ K++ +I A+G+A+
Sbjct: 273 QEAERAKFIVEKAEQDKRSAIIRAQGEAK 301
>02_04_0362 - 22366668-22367516
Length = 282
Score = 178 bits (433), Expect = 2e-45
Identities = 83/148 (56%), Positives = 120/148 (81%)
Frame = +1
Query: 4 RGRNVPTVTGSKDLQNVNITLRILFRPVPDQLPKIYTILGVDYDERVLPSITAEVLKAVV 183
R + + +G+KDLQ V++TLR+L RP D+LP I+T LG++YDE+VLPSI EVLKAVV
Sbjct: 78 RPHSFSSTSGTKDLQMVSLTLRVLARPDIDRLPDIFTSLGLEYDEKVLPSIGNEVLKAVV 137
Query: 184 AQFDAGELITQREVVSQKVSETLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQ 363
AQF+A +L+T+R VS V ++L RAA+F ++LDD++ITHL +G EF+QAVE KQVAQQ
Sbjct: 138 AQFNADQLLTERPHVSALVRDSLIRRAAEFNIVLDDVAITHLAYGPEFSQAVEKKQVAQQ 197
Query: 364 DAEKARFLVEKAEQQKKAGVIAAEGDAQ 447
+AE++RFLV +AEQ+++A ++ AEG+++
Sbjct: 198 EAERSRFLVARAEQERRAAIVRAEGESE 225
>04_04_0143 - 23091613-23092467
Length = 284
Score = 173 bits (421), Expect = 5e-44
Identities = 83/148 (56%), Positives = 117/148 (79%)
Frame = +1
Query: 4 RGRNVPTVTGSKDLQNVNITLRILFRPVPDQLPKIYTILGVDYDERVLPSITAEVLKAVV 183
R N + +G+KDLQ VN+TLR+L RP LP I+T LG++YD++VLPSI EVLKAVV
Sbjct: 77 RPHNFSSNSGTKDLQMVNLTLRLLSRPDVVHLPTIFTSLGLEYDDKVLPSIGNEVLKAVV 136
Query: 184 AQFDAGELITQREVVSQKVSETLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQ 363
AQF+A +L+T+R VS V + L RA +F +ILDD++ITHL++G EF+QAVE KQVAQQ
Sbjct: 137 AQFNADQLLTERPHVSALVRDALIRRAREFNIILDDVAITHLSYGIEFSQAVEKKQVAQQ 196
Query: 364 DAEKARFLVEKAEQQKKAGVIAAEGDAQ 447
+AE+++FLV KAEQ+++A ++ AEG+++
Sbjct: 197 EAERSKFLVAKAEQERRAAIVRAEGESE 224
>03_06_0437 -
33912326-33912520,33912870-33912998,33913147-33913317,
33913877-33913993,33914150-33914800
Length = 420
Score = 143 bits (346), Expect = 7e-35
Identities = 70/124 (56%), Positives = 94/124 (75%)
Frame = +1
Query: 1 ARGRNVPTVTGSKDLQNVNITLRILFRPVPDQLPKIYTILGVDYDERVLPSITAEVLKAV 180
AR V + +GS+DLQ V I LR+L RP+P++LP IY LG +++ERVLPSI E LKAV
Sbjct: 240 ARPNLVESTSGSRDLQMVKIGLRVLTRPLPEKLPTIYRSLGENFNERVLPSIIHETLKAV 299
Query: 181 VAQFDAGELITQREVVSQKVSETLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQ 360
VAQ++A +LITQRE VS+++ + LTERA+ F + LDD+SIT L+FGKEFT A+E KQ
Sbjct: 300 VAQYNASQLITQREAVSREIRKILTERASNFNIALDDVSITSLSFGKEFTHAIEAKQGEA 359
Query: 361 QDAE 372
+ A+
Sbjct: 360 KSAQ 363
>03_06_0427 -
33857008-33857137,33857224-33857258,33857966-33858046,
33858213-33858338,33858410-33858568,33858797-33858934,
33859084-33859155,33859359-33860273
Length = 551
Score = 58.0 bits (134), Expect = 3e-09
Identities = 30/71 (42%), Positives = 45/71 (63%)
Frame = +1
Query: 223 VVSQKVSETLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQDAEKARFLVEKAE 402
V++ + ETL AQ+ + I +F KEFT A+E KQV +Q+A++A+F+VEKAE
Sbjct: 402 VLTSLMHETLKAVVAQYNA--SQLIIPRESFRKEFTHAIETKQVDEQEAQRAKFIVEKAE 459
Query: 403 QQKKAGVIAAE 435
Q K+ VI +
Sbjct: 460 QHKRKAVITEQ 470
Score = 57.2 bits (132), Expect = 6e-09
Identities = 33/69 (47%), Positives = 45/69 (65%)
Frame = +1
Query: 16 VPTVTGSKDLQNVNITLRILFRPVPDQLPKIYTILGVDYDERVLPSITAEVLKAVVAQFD 195
V + +GS+DLQ V L +L RP+P + Y LG ++ ERVL S+ E LKAVVAQ++
Sbjct: 364 VESTSGSRDLQMVRPGLGVLTRPLPTK----YRSLGDNFCERVLTSLMHETLKAVVAQYN 419
Query: 196 AGELITQRE 222
A +LI RE
Sbjct: 420 ASQLIIPRE 428
>10_08_0298 -
16603417-16603775,16604015-16604203,16604420-16604540,
16604671-16604880
Length = 292
Score = 33.9 bits (74), Expect = 0.060
Identities = 32/148 (21%), Positives = 64/148 (43%)
Frame = +1
Query: 4 RGRNVPTVTGSKDLQNVNITLRILFRPVPDQLPKIYTILGVDYDERVLPSITAEVLKAVV 183
R +V T +KD V + I +R + D+ Y L + + S +V++A +
Sbjct: 59 RQLDVRCETKTKDNVFVTVVASIQYRAMEDKASDAYYKLSNPKSQ--IQSYVFDVIRASI 116
Query: 184 AQFDAGELITQREVVSQKVSETLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQ 363
+ + + Q+ +++ V E L + +G + I + ++ +A+ A +
Sbjct: 117 PKLELDDAFLQKNEIARAVEEELEKAMLAYGYEIVQTLIVDIEPDEKVKRAMNEINAAAR 176
Query: 364 DAEKARFLVEKAEQQKKAGVIAAEGDAQ 447
A EKAE +K + AEG+A+
Sbjct: 177 LRVAAN---EKAEAEKIIQIKRAEGEAE 201
>03_01_0069 + 549787-549791,550033-550303,550405-552201
Length = 690
Score = 31.5 bits (68), Expect = 0.32
Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Frame = +1
Query: 145 LPSITAE--VLK----AVVAQFDAGELITQREVVS-QKVSETLTERAAQFGLILDDISIT 303
L S+TAE +L+ A+ DA +R V S Q+ + + E A+ + ++ +
Sbjct: 195 LQSVTAELEILRMEQPVAAAKADAAAARARRMVSSSQEAVKVVEELTAELVALKKELDAS 254
Query: 304 HLTFGKEFTQAVELKQVAQQDAEKARFLVEKAEQQKK 414
H + + + L QV +QD ++ + ++E +EQ+ K
Sbjct: 255 HHAHDEAEEKRMRLAQVLEQDKDQWQLVLEVSEQEVK 291
>09_03_0032 +
11742279-11742398,11743318-11743359,11743394-11743555,
11743768-11743888,11744104-11744195,11744271-11744371,
11744592-11744949
Length = 331
Score = 30.7 bits (66), Expect = 0.56
Identities = 30/142 (21%), Positives = 64/142 (45%), Gaps = 2/142 (1%)
Frame = +1
Query: 28 TGSKDLQNVNITLRILFRPVPDQLPKIYTILGVDYDERVLPSITAEVLKAVVAQFDAGEL 207
T +KD V + + +R + D+ + L ++ + S +V++A V + + +
Sbjct: 105 TKTKDNVFVTVVASVQYRALADKASDAFYKLSNTREQ--IQSYVFDVIRATVPKLNLDDA 162
Query: 208 ITQREVVSQKVSETLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQ-DAEKARF 384
Q+ +++ V + L + + +G + I + V +K+ + +A K R
Sbjct: 163 FEQKNDIAKAVEDELEKAMSAYGYEIVQTLII------DIEPDVHVKRAMNEINAGKLRV 216
Query: 385 LV-EKAEQQKKAGVIAAEGDAQ 447
EKAE +K + AEG+A+
Sbjct: 217 AANEKAEAEKILQIKKAEGEAE 238
>05_07_0324 -
29266764-29267131,29267231-29267419,29267552-29267672,
29268041-29268229
Length = 288
Score = 29.5 bits (63), Expect = 1.3
Identities = 28/140 (20%), Positives = 61/140 (43%)
Frame = +1
Query: 28 TGSKDLQNVNITLRILFRPVPDQLPKIYTILGVDYDERVLPSITAEVLKAVVAQFDAGEL 207
T +KD VN+ I +R + + + L + + + +V++A V + + +
Sbjct: 60 TKTKDNVFVNVVASIQYRALAGKANDAFYKLSNTRSQ--IQAYVFDVIRASVPKLNLDDA 117
Query: 208 ITQREVVSQKVSETLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQDAEKARFL 387
Q+ +++ V + L + + +G + I + + +A+ A + A
Sbjct: 118 FEQKNDIAKAVEDELEKAMSAYGFEIVQTLIVDIEPDEHVKRAMNEINAAARLRVAAN-- 175
Query: 388 VEKAEQQKKAGVIAAEGDAQ 447
EKAE +K + AEG+A+
Sbjct: 176 -EKAEAEKIVQIKRAEGEAE 194
>02_02_0280 - 8515894-8517309
Length = 471
Score = 28.7 bits (61), Expect = 2.3
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 307 LTFGKEFTQAVELKQVAQQDAEK-ARFLVEKAEQQKKAGVIAAEG 438
+T T A + K+V A K A + EKAEQ K+A AA+G
Sbjct: 285 VTLSTGATVAQKAKEVTADTAHKVAEYAREKAEQGKEAAARAADG 329
>12_02_0090 + 13493311-13494180
Length = 289
Score = 28.3 bits (60), Expect = 3.0
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Frame = -2
Query: 356 ATCFNSTACVNSLPNVKCVMEMSSRMSPN*AALS--VKV-SLTFCDTTSLCVISSPA--S 192
AT + + P++ ++ ++ +P A S KV +L+ S+ + SP S
Sbjct: 84 ATSTPTAPSQTTAPSLATILVPATTSAPKPATASSPTKVPALSVNPILSIIGVPSPTTTS 143
Query: 191 NCATTAFSTSAVIEGNTLSS*STP 120
+ ATT ST+ + +TLSS STP
Sbjct: 144 SLATTTTSTAVLFPRSTLSSASTP 167
>08_02_0583 +
19006495-19006683,19006954-19007060,19007124-19007289,
19007362-19007458,19008011-19008366
Length = 304
Score = 27.9 bits (59), Expect = 3.9
Identities = 21/94 (22%), Positives = 43/94 (45%)
Frame = +1
Query: 166 VLKAVVAQFDAGELITQREVVSQKVSETLTERAAQFGLILDDISITHLTFGKEFTQAVEL 345
V++A V + + + Q+ +++ V + L + + +G + I + + +A+
Sbjct: 124 VIRASVPKMNLDDAFEQKNEIAKAVEDELEKAMSMYGYEIVQTLIVDIEPDEHVKRAMNE 183
Query: 346 KQVAQQDAEKARFLVEKAEQQKKAGVIAAEGDAQ 447
A + A EKAE +K + AEGDA+
Sbjct: 184 INAAARLRVAAN---EKAEAEKILQIKRAEGDAE 214
>09_01_0081 - 1173593-1173790,1173949-1174035,1174122-1174349
Length = 170
Score = 27.1 bits (57), Expect = 6.9
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -2
Query: 248 VSLTFCDTTSLCVISSPASNCATTAF--STSAVIEGNTLS 135
V+L C+T + C +PA C T TS+ + GN S
Sbjct: 93 VTLCGCNTIAACQAGAPAGACKDTGAPNRTSSSVNGNVYS 132
>07_03_0912 + 22544144-22545589
Length = 481
Score = 27.1 bits (57), Expect = 6.9
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 334 AVELKQVAQQDAEKARFLVEKAEQQK 411
AVEL++ +D + AR LVE AE ++
Sbjct: 397 AVELRRTTAKDGDAARSLVEAAEVER 422
>12_02_0134 -
14071190-14071435,14071800-14071988,14072114-14072194,
14072261-14072404,14072528-14072761,14072836-14073981,
14074863-14074922,14075178-14075420,14075509-14075607,
14076196-14076367,14076597-14076735,14077514-14077624,
14077695-14077797,14077885-14077962,14078054-14078122,
14078203-14078275,14078891-14078975,14079473-14079536,
14079963-14080073,14080139-14080213,14080306-14080398,
14080982-14081056,14081172-14081261
Length = 1259
Score = 26.6 bits (56), Expect = 9.1
Identities = 20/75 (26%), Positives = 31/75 (41%)
Frame = -2
Query: 377 AFSASCCATCFNSTACVNSLPNVKCVMEMSSRMSPN*AALSVKVSLTFCDTTSLCVISSP 198
A CC AC+ S N + ++S + LSV L+ D T V S
Sbjct: 651 ALVVHCCLALATIAACLKSEGNSSASIILTSSQKKQRSRLSVLAHLSSVDDT---VKSCL 707
Query: 197 ASNCATTAFSTSAVI 153
+CA+ + S++I
Sbjct: 708 QPHCASAMLALSSLI 722
>05_01_0133 +
895107-895280,895960-896271,896815-897081,897161-897265
Length = 285
Score = 26.6 bits (56), Expect = 9.1
Identities = 18/72 (25%), Positives = 36/72 (50%)
Frame = +1
Query: 160 AEVLKAVVAQFDAGELITQREVVSQKVSETLTERAAQFGLILDDISITHLTFGKEFTQAV 339
AE+L+ + Q +A + +S++ L ++ + G+I D + H T GKE+ +
Sbjct: 3 AELLE-LQRQLEAAQSARSSVRLSERNVVELVQKLQERGII--DFELLHTTSGKEYITSD 59
Query: 340 ELKQVAQQDAEK 375
LK + + +K
Sbjct: 60 HLKHEIKMEIKK 71
>04_02_0017 -
8572400-8572732,8572818-8572919,8573138-8573230,
8573391-8573519,8573781-8574025,8574184-8574453,
8574590-8574752,8575965-8576063
Length = 477
Score = 26.6 bits (56), Expect = 9.1
Identities = 19/78 (24%), Positives = 34/78 (43%)
Frame = +1
Query: 133 DERVLPSITAEVLKAVVAQFDAGELITQREVVSQKVSETLTERAAQFGLILDDISITHLT 312
++ PS+T EV+ V+A+ Q + + TL E+ A L DD+
Sbjct: 379 EDEEAPSMT-EVVAGVLAEKTKKPTFLQTVGIQSRKKGTLKEQLAAEKLAKDDLKSQVQE 437
Query: 313 FGKEFTQAVELKQVAQQD 366
K+ ++ + + QQD
Sbjct: 438 LAKKLQESEQARVAEQQD 455
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.133 0.351
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,421,606
Number of Sequences: 37544
Number of extensions: 187081
Number of successful extensions: 565
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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