Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_B03
(447 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087079-9|AAK27865.1| 275|Caenorhabditis elegans Mitochondrial... 226 5e-60
U28940-7|AAA68353.2| 294|Caenorhabditis elegans Mitochondrial p... 165 2e-41
Z81072-4|CAB03018.2| 327|Caenorhabditis elegans Hypothetical pr... 38 0.003
U29537-9|AAK31506.2| 161|Caenorhabditis elegans Hypothetical pr... 31 0.50
U29537-8|ABS83848.1| 258|Caenorhabditis elegans Hypothetical pr... 31 0.50
U07628-1|AAA17738.1| 515|Caenorhabditis elegans APX-1 protein. 29 1.2
AF101319-2|AAC69353.4| 515|Caenorhabditis elegans Anterior phar... 29 1.2
U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type chlo... 29 1.5
AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type chlo... 29 1.5
AC084197-30|AAK68595.1| 303|Caenorhabditis elegans Exosome (mul... 29 2.0
AL132895-2|CAC14404.1| 613|Caenorhabditis elegans Hypothetical ... 28 2.7
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 28 2.7
Z92786-10|CAB07212.3| 984|Caenorhabditis elegans Hypothetical p... 27 6.2
Z81532-8|CAB04327.2| 248|Caenorhabditis elegans Hypothetical pr... 27 6.2
U28731-2|AAA68297.1| 658|Caenorhabditis elegans Hypothetical pr... 27 6.2
AL021473-3|CAA16306.3| 984|Caenorhabditis elegans Hypothetical ... 27 6.2
AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trn... 27 6.2
AF077541-8|AAK68426.1| 908|Caenorhabditis elegans Cysteinyl trn... 27 6.2
>AC087079-9|AAK27865.1| 275|Caenorhabditis elegans Mitochondrial
prohibitin complexprotein 1 protein.
Length = 275
Score = 226 bits (553), Expect = 5e-60
Identities = 113/146 (77%), Positives = 126/146 (86%)
Frame = +1
Query: 10 RNVPTVTGSKDLQNVNITLRILFRPVPDQLPKIYTILGVDYDERVLPSITAEVLKAVVAQ 189
R V T+TGSKDLQNVNITLRIL RP PD+LP IY +G+DY ERVLPSIT EVLKAVVAQ
Sbjct: 77 RAVTTITGSKDLQNVNITLRILHRPSPDRLPNIYLNIGLDYAERVLPSITNEVLKAVVAQ 136
Query: 190 FDAGELITQREVVSQKVSETLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQDA 369
FDA E+ITQREVVSQ+ S L ERAAQFGL+LDDI+ITHL FG+EFT+AVE+KQVAQQ+A
Sbjct: 137 FDAHEMITQREVVSQRASVALRERAAQFGLLLDDIAITHLNFGREFTEAVEMKQVAQQEA 196
Query: 370 EKARFLVEKAEQQKKAGVIAAEGDAQ 447
EKAR+LVEKAEQ K A V AEGDAQ
Sbjct: 197 EKARYLVEKAEQMKIAAVTTAEGDAQ 222
>U28940-7|AAA68353.2| 294|Caenorhabditis elegans Mitochondrial
prohibitin complexprotein 2 protein.
Length = 294
Score = 165 bits (400), Expect = 2e-41
Identities = 82/149 (55%), Positives = 110/149 (73%)
Frame = +1
Query: 1 ARGRNVPTVTGSKDLQNVNITLRILFRPVPDQLPKIYTILGVDYDERVLPSITAEVLKAV 180
AR + + TGSKDLQ VNI LR+L RP P+ L IY LG +++ERVLPSI EVLK V
Sbjct: 84 ARPNQIRSPTGSKDLQMVNIGLRVLSRPNPEHLVHIYRTLGQNWEERVLPSICNEVLKGV 143
Query: 181 VAQFDAGELITQREVVSQKVSETLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQ 360
VA+F+A +LITQR+ VS V +TL ERA F +ILDD+S+T L F +++ AVE KQVA
Sbjct: 144 VAKFNASQLITQRQQVSMLVRKTLIERALDFNIILDDVSLTELAFSPQYSAAVEAKQVAA 203
Query: 361 QDAEKARFLVEKAEQQKKAGVIAAEGDAQ 447
Q+A++A F VE+A+QQK+ ++ AEG+A+
Sbjct: 204 QEAQRATFYVERAKQQKQEKIVQAEGEAE 232
>Z81072-4|CAB03018.2| 327|Caenorhabditis elegans Hypothetical
protein F30A10.5 protein.
Length = 327
Score = 37.9 bits (84), Expect = 0.003
Identities = 27/138 (19%), Positives = 66/138 (47%), Gaps = 1/138 (0%)
Frame = +1
Query: 31 GSKDLQNVNITLR-ILFRPVPDQLPKIYTILGVDYDERVLPSITAEVLKAVVAQFDAGEL 207
G+ + NV + L +L+ V D GVD E + + +++ V + + +
Sbjct: 90 GAITIDNVQLRLDGVLYLRVFDPYKACDASYGVDDPEFAVTQLAQTTMRSEVGKINLDTV 149
Query: 208 ITQREVVSQKVSETLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQDAEKARFL 387
+RE++++ + + + +A +G+ I + + +A++++ A++ K R
Sbjct: 150 FKERELLNENIVFAINKASAPWGIQCMRYEIRDMQMPSKIQEAMQMQVEAER---KKRAA 206
Query: 388 VEKAEQQKKAGVIAAEGD 441
+ ++E ++A + AEGD
Sbjct: 207 ILESEGIREAAINRAEGD 224
>U29537-9|AAK31506.2| 161|Caenorhabditis elegans Hypothetical
protein F28B12.1a protein.
Length = 161
Score = 30.7 bits (66), Expect = 0.50
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 132 IIHTENCINLR*LIRHWSEQYTKCDVYILKI 40
+I T C+NL L+ H+ +Q T +Y+ KI
Sbjct: 74 VIRTLRCVNLPELVEHYEDQLTAQKIYLEKI 104
>U29537-8|ABS83848.1| 258|Caenorhabditis elegans Hypothetical
protein F28B12.1b protein.
Length = 258
Score = 30.7 bits (66), Expect = 0.50
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 132 IIHTENCINLR*LIRHWSEQYTKCDVYILKI 40
+I T C+NL L+ H+ +Q T +Y+ KI
Sbjct: 171 VIRTLRCVNLPELVEHYEDQLTAQKIYLEKI 201
>U07628-1|AAA17738.1| 515|Caenorhabditis elegans APX-1 protein.
Length = 515
Score = 29.5 bits (63), Expect = 1.2
Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 3/86 (3%)
Frame = -2
Query: 407 CCSAFSTRN--LAFSASCCATCFNSTACVNSLPNVKCVMEMSSRMSPN*AALSVKVSLTF 234
C S R +A + CA FN T C LP CV +PN
Sbjct: 177 CAGGCSNRGRCVAPNQCSCADGFNGTRCEQCLPRAGCVNGDCVNETPNTCKCRDGFIGDR 236
Query: 233 CD-TTSLCVISSPASNCATTAFSTSA 159
CD +C + P +N + +S+
Sbjct: 237 CDIDIKICSLEKPCANGGICSIDSSS 262
>AF101319-2|AAC69353.4| 515|Caenorhabditis elegans Anterior pharynx
in excess protein1 protein.
Length = 515
Score = 29.5 bits (63), Expect = 1.2
Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 3/86 (3%)
Frame = -2
Query: 407 CCSAFSTRN--LAFSASCCATCFNSTACVNSLPNVKCVMEMSSRMSPN*AALSVKVSLTF 234
C S R +A + CA FN T C LP CV +PN
Sbjct: 177 CAGGCSNRGRCVAPNQCSCADGFNGTRCEQCLPRAGCVNGDCVNETPNTCKCRDGFIGDR 236
Query: 233 CD-TTSLCVISSPASNCATTAFSTSA 159
CD +C + P +N + +S+
Sbjct: 237 CDIDIKICSLEKPCANGGICSIDSSS 262
>U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type
chloride channel protein3, isoform a protein.
Length = 1001
Score = 29.1 bits (62), Expect = 1.5
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +1
Query: 94 QLPKIYTILGVDYDERVLPSITAEVLKAVVAQFDAGELIT-QREVVSQKVSETLTERAAQ 270
Q+ K T+ G+ +E +T E +A+ FDA L T +RE+ + ++ E
Sbjct: 680 QVAKNETLTGLS-EENARKILTVEEKQAL---FDAASLATPKREMSGKTINPVHIESHHT 735
Query: 271 FGLILDDISITHLTFGKE 324
G I SITHL+FG++
Sbjct: 736 IGDIFR--SITHLSFGRQ 751
>AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type
chloride channel CLH-3b protein.
Length = 1001
Score = 29.1 bits (62), Expect = 1.5
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +1
Query: 94 QLPKIYTILGVDYDERVLPSITAEVLKAVVAQFDAGELIT-QREVVSQKVSETLTERAAQ 270
Q+ K T+ G+ +E +T E +A+ FDA L T +RE+ + ++ E
Sbjct: 680 QVAKNETLTGLS-EENARKILTVEEKQAL---FDAASLATPKREMSGKTINPVHIESHHT 735
Query: 271 FGLILDDISITHLTFGKE 324
G I SITHL+FG++
Sbjct: 736 IGDIFR--SITHLSFGRQ 751
>AC084197-30|AAK68595.1| 303|Caenorhabditis elegans Exosome
(multiexonuclease complex)component protein 2 protein.
Length = 303
Score = 28.7 bits (61), Expect = 2.0
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Frame = +1
Query: 115 ILGVDYDERVLPSITAEVLKAVVAQFDAGELITQREVVSQKVSETLTERAAQFGLILD-- 288
I+G + V PS+ L+ + G + + ++V V T+ AA L+ D
Sbjct: 202 IIGCNGSVWVTPSLPETTLE------EDGSHVHEFQIVPPDVRVTMVRIAACVRLLRDYS 255
Query: 289 -DISITHLTFGKEFTQAVELKQVAQQDAEK------ARFLVEKAEQQK 411
I + LT E +Q E+K++A+QD A L+++ +QQK
Sbjct: 256 ISIYLNSLTTCYEMSQPYEIKELAEQDTSSRLAYLIAARLLQELQQQK 303
>AL132895-2|CAC14404.1| 613|Caenorhabditis elegans Hypothetical
protein Y59A8A.2 protein.
Length = 613
Score = 28.3 bits (60), Expect = 2.7
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 172 KAVVAQFDAGELITQREVVS-QKVSETLTERAAQFGLILDDIS 297
K +V +F A E + ++++ S +K+ + LTE GL+L D +
Sbjct: 465 KHLVERFSANEELIEQKLTSIEKLHQLLTELGGDSGLLLSDFN 507
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 28.3 bits (60), Expect = 2.7
Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 6/112 (5%)
Frame = -2
Query: 368 ASCCATCFNSTACVNSLPNVKCVMEMSSRMSPN*AALSVKVSLTFCDTTSLCVISSPASN 189
+S + F + + +V E S SP+ ++ V+ T TTS I+ P +
Sbjct: 745 SSASPSDFTTPDFIGFTSSVSRTSEQYSSSSPSSDTTTMDVTSTVSTTTSSTFIAKPQAT 804
Query: 188 CATTAFSTSA------VIEGNTLSS*STPRIV*ILGS*SGTGLNNIRSVMFT 51
A+T SA ++ +T++ ST I+ S T + S +FT
Sbjct: 805 TASTENPESAAPLDASTLDSSTIAYSSTTPIIARSSEASSTDTRSTTSTIFT 856
>Z92786-10|CAB07212.3| 984|Caenorhabditis elegans Hypothetical
protein Y20C6A.1 protein.
Length = 984
Score = 27.1 bits (57), Expect = 6.2
Identities = 24/117 (20%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Frame = +1
Query: 103 KIYTILGVDYD--ERVLPSITAEVLKAVVAQFDAGELITQREVVSQKVSETLTERAAQFG 276
K +LGVD R+L + LK + +DA + + E+ + K+ E + A+
Sbjct: 797 KCIVMLGVDLPIIRRILSYLDKNELKMIFLNYDAYSRVEEEELDTTKLVELDQWKMAEEL 856
Query: 277 LILD-DISITHLTFGKEFTQAVELKQVAQQDAEKARFLVEKAEQQKKAGVIAAEGDA 444
+LD +S + G V L+ ++ +D + + + + + + + DA
Sbjct: 857 RVLDCGLSFSVENIGHFLKVEVTLRTISVEDLVYLKEIFKTSSANRNFNIKSRSFDA 913
>Z81532-8|CAB04327.2| 248|Caenorhabditis elegans Hypothetical
protein F36F2.4 protein.
Length = 248
Score = 27.1 bits (57), Expect = 6.2
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +1
Query: 394 KAEQQKKAGVIAAEGDAQ 447
KA Q +KAG++AAE DAQ
Sbjct: 105 KAAQTEKAGMVAAEMDAQ 122
>U28731-2|AAA68297.1| 658|Caenorhabditis elegans Hypothetical
protein F12A10.4 protein.
Length = 658
Score = 27.1 bits (57), Expect = 6.2
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +3
Query: 225 CITESQRDFDRESSSVRTHPR*HFHHTLDIRQGVHAGRRVETSCTTGR*E 374
C+ S + SSV H H D R+ V+ RR+ + C G+ E
Sbjct: 99 CVKYSAELLELMDSSVNPCENFHHHEKPDHRKAVNVVRRMLSKCAMGKTE 148
>AL021473-3|CAA16306.3| 984|Caenorhabditis elegans Hypothetical
protein Y20C6A.1 protein.
Length = 984
Score = 27.1 bits (57), Expect = 6.2
Identities = 24/117 (20%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Frame = +1
Query: 103 KIYTILGVDYD--ERVLPSITAEVLKAVVAQFDAGELITQREVVSQKVSETLTERAAQFG 276
K +LGVD R+L + LK + +DA + + E+ + K+ E + A+
Sbjct: 797 KCIVMLGVDLPIIRRILSYLDKNELKMIFLNYDAYSRVEEEELDTTKLVELDQWKMAEEL 856
Query: 277 LILD-DISITHLTFGKEFTQAVELKQVAQQDAEKARFLVEKAEQQKKAGVIAAEGDA 444
+LD +S + G V L+ ++ +D + + + + + + + DA
Sbjct: 857 RVLDCGLSFSVENIGHFLKVEVTLRTISVEDLVYLKEIFKTSSANRNFNIKSRSFDA 913
>AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform a protein.
Length = 909
Score = 27.1 bits (57), Expect = 6.2
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Frame = +1
Query: 181 VAQF-DAGELITQREVVSQKVSE--TLTERA-AQFGLILDDISITHLTFGKEFTQAVELK 348
+AQF + LI + V+ + E TL ++ + G+ L+D + T K +A L+
Sbjct: 762 LAQFREKVRLIAKEHKVNGILEECDTLRDKTLTELGVRLEDRN--GQTVVKLVDRATLLR 819
Query: 349 QVAQQDAEKARFLVEKAEQQKKA 417
+ Q+D EK R EKA++++KA
Sbjct: 820 EQEQKDTEKKRKDKEKADKEQKA 842
>AF077541-8|AAK68426.1| 908|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform b protein.
Length = 908
Score = 27.1 bits (57), Expect = 6.2
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Frame = +1
Query: 181 VAQF-DAGELITQREVVSQKVSE--TLTERA-AQFGLILDDISITHLTFGKEFTQAVELK 348
+AQF + LI + V+ + E TL ++ + G+ L+D + T K +A L+
Sbjct: 761 LAQFREKVRLIAKEHKVNGILEECDTLRDKTLTELGVRLEDRN--GQTVVKLVDRATLLR 818
Query: 349 QVAQQDAEKARFLVEKAEQQKKA 417
+ Q+D EK R EKA++++KA
Sbjct: 819 EQEQKDTEKKRKDKEKADKEQKA 841
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.316 0.133 0.351
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,072,189
Number of Sequences: 27780
Number of extensions: 173050
Number of successful extensions: 595
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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