Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_B02
(369 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 115 2e-27
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 110 6e-26
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 110 6e-26
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 68 4e-13
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 60 1e-10
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 29 0.17
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 29 0.23
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 0.93
SPBC13E7.04 |atp16||F1-ATPase delta subunit |Schizosaccharomyces... 27 1.2
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom... 26 1.6
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 25 2.8
SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe... 25 3.7
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 24 8.6
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 115 bits (277), Expect = 2e-27
Identities = 58/121 (47%), Positives = 78/121 (64%), Gaps = 2/121 (1%)
Frame = +2
Query: 11 QIEVTFEIDANGILQVSAEDK-GTGNREKIVITNDQNRLTPEDIERMIXXXXXXXXXXXX 187
QIEVTFE+DANG+L VSA DK G G EK+VI ND+ RL+ EDIERM+
Sbjct: 500 QIEVTFEVDANGVLTVSAVDKSGKGKPEKLVIKNDKGRLSEEDIERMVKEAEEFAEEDKI 559
Query: 188 XXXRVESRNELESYAYSIKNQLQDKEKLGSKLSDDEKTKMEEAIDVAIKWLE-DNQDADS 364
R+E+RN LE+YAYS+K Q D E+LG K+ ++K + +A++ +WLE +DA
Sbjct: 560 LKERIEARNTLENYAYSLKGQFDDDEQLGGKVDPEDKQAVLDAVEDVAEWLEIHGEDASK 619
Query: 365 E 367
E
Sbjct: 620 E 620
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 110 bits (265), Expect = 6e-26
Identities = 52/116 (44%), Positives = 75/116 (64%)
Frame = +2
Query: 11 QIEVTFEIDANGILQVSAEDKGTGNREKIVITNDQNRLTPEDIERMIXXXXXXXXXXXXX 190
QIEVTF++DANGIL VSA +KGTG +KI ITND+ RL+ E+I+RM+
Sbjct: 471 QIEVTFDVDANGILNVSALEKGTGKTQKITITNDKGRLSKEEIDRMVSEAEKYKAEDEAE 530
Query: 191 XXRVESRNELESYAYSIKNQLQDKEKLGSKLSDDEKTKMEEAIDVAIKWLEDNQDA 358
R++++N LESYAYS++N L D L K+ +K +++A+ I+WL+ N A
Sbjct: 531 TSRIQAKNHLESYAYSLRNSLDD-PNLKDKVDASDKEAIDKAVKETIEWLDHNTTA 585
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 110 bits (265), Expect = 6e-26
Identities = 52/116 (44%), Positives = 75/116 (64%)
Frame = +2
Query: 11 QIEVTFEIDANGILQVSAEDKGTGNREKIVITNDQNRLTPEDIERMIXXXXXXXXXXXXX 190
QIEVTF++DANGIL VSA +KGTG +KI ITND+ RL+ E+I+RM+
Sbjct: 471 QIEVTFDVDANGILNVSALEKGTGKTQKITITNDKGRLSKEEIDRMVAEAEKYKAEDEAE 530
Query: 191 XXRVESRNELESYAYSIKNQLQDKEKLGSKLSDDEKTKMEEAIDVAIKWLEDNQDA 358
R++++N LESYAYS++N L D L K+ +K +++A+ I+WL+ N A
Sbjct: 531 SGRIQAKNHLESYAYSLRNSLDD-PNLKDKVDASDKETVDKAVKETIEWLDSNTTA 585
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 68.1 bits (159), Expect = 4e-13
Identities = 37/113 (32%), Positives = 62/113 (54%)
Frame = +2
Query: 5 EAQIEVTFEIDANGILQVSAEDKGTGNREKIVITNDQNRLTPEDIERMIXXXXXXXXXXX 184
+A++E TFE+DANGIL+V+A +K TG I ITN L+ I+ MI
Sbjct: 474 QAELEATFELDANGILKVTAVEKTTGRSAHIEITNSVGHLSSTKIQEMIENADKFKQQDK 533
Query: 185 XXXXRVESRNELESYAYSIKNQLQDKEKLGSKLSDDEKTKMEEAIDVAIKWLE 343
++E++++LESY +I+ + + + KL +K+K+E + + LE
Sbjct: 534 DFAKKLEAKSQLESYISNIETTISEPNVM-MKLKRGDKSKIEAQLAECMSQLE 585
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 60.1 bits (139), Expect = 1e-10
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Frame = +2
Query: 5 EAQIEVTFEIDANGILQVSAEDKGTGNREKIVITNDQNRLTPEDIERMIXXXXXXXXXXX 184
+ QIEV+F++DA+GI+ VSA DK T N++ + + LT +IE M+
Sbjct: 512 QPQIEVSFDVDADGIINVSARDKAT-NKDSSITVAGSSGLTDSEIEAMVADAEKYRASDM 570
Query: 185 XXXXRVESRNELESYAYSIKNQLQ-DKEKLGSKLSDDEKTKMEEAIDVAIKWLEDNQDAD 361
+E+ N ES I++ L K+KL + +D ++K+ + + K ++
Sbjct: 571 ARKEAIENGNRAESVCTDIESNLDIHKDKLDQQAVEDLRSKITDLRETVAKVNAGDEGIT 630
Query: 362 SE 367
SE
Sbjct: 631 SE 632
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 29.5 bits (63), Expect = 0.17
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = +2
Query: 239 IKNQLQD--KEKLGSKLSDDEKTKMEEAID 322
+KNQ+ D KEKL SDDEK ++E D
Sbjct: 1094 LKNQIDDLAKEKLPLSSSDDEKVNIKEKTD 1123
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 29.1 bits (62), Expect = 0.23
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = +2
Query: 200 VESRNELESYAYSIKNQLQDKEKLGSKLSDDEKTKMEEAIDVAIKWLEDNQD 355
+ S+N+ SY S N+LQD K+ +DD +E A V K L D D
Sbjct: 355 ISSKNQTNSYL-SAANRLQDSPKISKARTDDALQALEVA-RVHEKLLSDKVD 404
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 27.1 bits (57), Expect = 0.93
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 224 SYAYSIKNQLQDKEKLGSKLSDDEKTKMEEAIDVAIKWLEDNQDADSE 367
S A+S + K + K D+ EE D+AI WL++ D S+
Sbjct: 732 SKAFSSRRLNAPKLRQVRKRIDNGLCTQEEVEDIAINWLDEVSDLSSD 779
>SPBC13E7.04 |atp16||F1-ATPase delta subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 160
Score = 26.6 bits (56), Expect = 1.2
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 215 ELESYAYSIKNQLQDKEKLGSKLSDDEKTKMEEAIDVAI 331
+LE ++ S+ NQL +K K S DE E A+ V++
Sbjct: 114 KLEDFSSSVANQLLEKHK-AEMNSSDEGVAAEAAVRVSV 151
>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 26.2 bits (55), Expect = 1.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 96 IFSRLPVPLSSADTCRIPFASISNV 22
IF R+P+P S DT + S SN+
Sbjct: 322 IFGRMPIPAQSLDTTMLRTDSNSNI 346
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 25.4 bits (53), Expect = 2.8
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 263 EKLGSKLSDDEKTKMEEAIDVAIKWLEDNQDADSE 367
E++ LS+DE + E DVA ++ E+ + +D E
Sbjct: 469 EEMEEALSEDEDFQAESESDVAEEYDENAESSDEE 503
>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 395
Score = 25.0 bits (52), Expect = 3.7
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 35 DANGILQVSAEDKGTGNREKIVITNDQNRLTPEDIER 145
D G + V E+KG + E++++ ++TPE +ER
Sbjct: 12 DVKGSI-VDGEEKGI-DYERLIVQFGTRKITPEQLER 46
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 23.8 bits (49), Expect = 8.6
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 200 VESRNELESYAYSIKNQLQDKEKLGSKLSDDEKTKMEEAIDVAIKWLEDNQD 355
+++RN + S K L +KEK + D+EK + E ++ K D +D
Sbjct: 1397 LKARNGRNNDDSSNKINLSEKEKEKESIEDEEKNR-EGSMSPVAKHASDVED 1447
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,253,334
Number of Sequences: 5004
Number of extensions: 20285
Number of successful extensions: 75
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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