Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_B02
(369 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M28528-1|AAA28076.1| 288|Caenorhabditis elegans protein ( C.ele... 157 2e-39
U56965-1|AAB52671.1| 661|Caenorhabditis elegans Heat shock prot... 157 3e-39
AF000264-1|AAC71123.1| 657|Caenorhabditis elegans Heat shock pr... 156 4e-39
M26604-1|AAA28074.1| 661|Caenorhabditis elegans protein ( C. el... 154 2e-38
Z80223-1|CAB02319.1| 640|Caenorhabditis elegans Hypothetical pr... 121 1e-28
M18540-1|AAA28078.1| 640|Caenorhabditis elegans protein ( C.ele... 118 1e-27
Z83108-5|CAB05508.1| 645|Caenorhabditis elegans Hypothetical pr... 109 6e-25
Z83108-4|CAB05507.1| 645|Caenorhabditis elegans Hypothetical pr... 109 6e-25
Z81467-1|CAB03871.1| 643|Caenorhabditis elegans Hypothetical pr... 100 4e-22
U88315-3|AAB42371.1| 657|Caenorhabditis elegans Heat shock prot... 58 2e-09
Z81113-10|CAB54300.1| 607|Caenorhabditis elegans Hypothetical p... 45 1e-05
Z81059-7|CAB54217.1| 607|Caenorhabditis elegans Hypothetical pr... 45 1e-05
U28940-6|AAA68352.1| 925|Caenorhabditis elegans Hypothetical pr... 40 4e-04
Z67884-4|CAH60753.1| 905|Caenorhabditis elegans Hypothetical pr... 35 0.016
Z67884-3|CAA91809.2| 921|Caenorhabditis elegans Hypothetical pr... 35 0.016
Z81080-4|CAB03087.2| 224|Caenorhabditis elegans Hypothetical pr... 31 0.26
Z92782-13|CAI79170.1| 67|Caenorhabditis elegans Hypothetical p... 28 1.8
AC024817-3|AAK68524.1| 482|Caenorhabditis elegans Hypothetical ... 28 1.8
U23517-1|AAB93336.1| 245|Caenorhabditis elegans Hypothetical pr... 28 2.4
Z77669-5|CAK12563.1| 976|Caenorhabditis elegans Hypothetical pr... 27 3.2
Z77669-4|CAB01242.1| 988|Caenorhabditis elegans Hypothetical pr... 27 3.2
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos... 27 3.2
Z79604-3|CAD36502.1| 817|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z79604-2|CAB01900.1| 780|Caenorhabditis elegans Hypothetical pr... 27 5.5
AF332205-1|AAK17976.1| 817|Caenorhabditis elegans nuclear recep... 27 5.5
AF332204-1|AAK17975.1| 519|Caenorhabditis elegans nuclear recep... 27 5.5
AF003136-10|AAK21378.2| 1281|Caenorhabditis elegans High inciden... 27 5.5
AC006708-24|AAF60413.1| 660|Caenorhabditis elegans Hypothetical... 27 5.5
Z83216-4|CAB62781.1| 314|Caenorhabditis elegans Hypothetical pr... 26 7.3
AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric ... 26 7.3
AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric ... 26 7.3
U49944-2|AAA93416.1| 160|Caenorhabditis elegans Hypothetical pr... 26 9.7
>M28528-1|AAA28076.1| 288|Caenorhabditis elegans protein (
C.elegans heat shockprotein 4 gene, 3' end. ).
Length = 288
Score = 157 bits (382), Expect = 2e-39
Identities = 74/119 (62%), Positives = 88/119 (73%)
Frame = +2
Query: 11 QIEVTFEIDANGILQVSAEDKGTGNREKIVITNDQNRLTPEDIERMIXXXXXXXXXXXXX 190
QIEVTFEID NGIL VSAEDKGTGN+ K+ ITND NRL+PEDIERMI
Sbjct: 129 QIEVTFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPEDIERMINDADKFAADDQAQ 188
Query: 191 XXRVESRNELESYAYSIKNQLQDKEKLGSKLSDDEKTKMEEAIDVAIKWLEDNQDADSE 367
+VESRNELE+YAY IK Q+ DKEKLG KL+D++K +E A++ AI+WL NQDA +E
Sbjct: 189 KEKVESRNELEAYAYQIKTQIADKEKLGGKLTDEDKVSIESAVERAIEWLGSNQDASTE 247
>U56965-1|AAB52671.1| 661|Caenorhabditis elegans Heat shock protein
protein 3 protein.
Length = 661
Score = 157 bits (380), Expect = 3e-39
Identities = 73/119 (61%), Positives = 89/119 (74%)
Frame = +2
Query: 11 QIEVTFEIDANGILQVSAEDKGTGNREKIVITNDQNRLTPEDIERMIXXXXXXXXXXXXX 190
QIEVTFEID NGIL V+AEDKGTGN+ KI ITNDQNRL+PEDIERMI
Sbjct: 501 QIEVTFEIDVNGILHVTAEDKGTGNKNKITITNDQNRLSPEDIERMINDAEKFAEDDKKV 560
Query: 191 XXRVESRNELESYAYSIKNQLQDKEKLGSKLSDDEKTKMEEAIDVAIKWLEDNQDADSE 367
+ E+RNELESYAY++KNQ++DKEKLG KL +D+K +EEA++ AI WL N +A +E
Sbjct: 561 KDKAEARNELESYAYNLKNQIEDKEKLGGKLDEDDKKTIEEAVEEAISWLGSNAEASAE 619
>AF000264-1|AAC71123.1| 657|Caenorhabditis elegans Heat shock
protein protein 4 protein.
Length = 657
Score = 156 bits (379), Expect = 4e-39
Identities = 73/119 (61%), Positives = 88/119 (73%)
Frame = +2
Query: 11 QIEVTFEIDANGILQVSAEDKGTGNREKIVITNDQNRLTPEDIERMIXXXXXXXXXXXXX 190
QIEVTFEID NGIL VSAEDKGTGN+ K+ ITND NRL+PEDIERMI
Sbjct: 498 QIEVTFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPEDIERMINDADKFAADDQAQ 557
Query: 191 XXRVESRNELESYAYSIKNQLQDKEKLGSKLSDDEKTKMEEAIDVAIKWLEDNQDADSE 367
+VESRNELE+YAY +K Q+ DKEKLG KL+D++K +E A++ AI+WL NQDA +E
Sbjct: 558 KEKVESRNELEAYAYQMKTQIADKEKLGGKLTDEDKVSIESAVERAIEWLGSNQDASTE 616
>M26604-1|AAA28074.1| 661|Caenorhabditis elegans protein ( C.
elegans BiP (hsp3)gene, complete cds. ).
Length = 661
Score = 154 bits (374), Expect = 2e-38
Identities = 72/119 (60%), Positives = 88/119 (73%)
Frame = +2
Query: 11 QIEVTFEIDANGILQVSAEDKGTGNREKIVITNDQNRLTPEDIERMIXXXXXXXXXXXXX 190
QIEVTFEID NGIL V+AEDKGTGN+ KI ITNDQNRL+PEDIE MI
Sbjct: 501 QIEVTFEIDVNGILHVTAEDKGTGNKNKITITNDQNRLSPEDIEAMINDAEKFAEDDKKV 560
Query: 191 XXRVESRNELESYAYSIKNQLQDKEKLGSKLSDDEKTKMEEAIDVAIKWLEDNQDADSE 367
+ E+RNELESYAY++KNQ++DKEKLG KL +D+K +EEA++ AI WL N +A +E
Sbjct: 561 KDKAEARNELESYAYNLKNQIEDKEKLGGKLDEDDKKTIEEAVEEAISWLGSNAEASAE 619
>Z80223-1|CAB02319.1| 640|Caenorhabditis elegans Hypothetical
protein F26D10.3 protein.
Length = 640
Score = 121 bits (292), Expect = 1e-28
Identities = 58/119 (48%), Positives = 80/119 (67%)
Frame = +2
Query: 11 QIEVTFEIDANGILQVSAEDKGTGNREKIVITNDQNRLTPEDIERMIXXXXXXXXXXXXX 190
QIEVTF+IDANGIL VSA DK TG + KI ITND+ RL+ +DIERM+
Sbjct: 474 QIEVTFDIDANGILNVSATDKSTGKQNKITITNDKGRLSKDDIERMVNEAEKYKADDEAQ 533
Query: 191 XXRVESRNELESYAYSIKNQLQDKEKLGSKLSDDEKTKMEEAIDVAIKWLEDNQDADSE 367
R+ ++N LESYA+++K ++D EKL K+S ++K K+E+ D +KWL+ NQ A+ E
Sbjct: 534 KDRIGAKNGLESYAFNLKQTIED-EKLKDKISPEDKKKIEDKCDEILKWLDSNQTAEKE 591
>M18540-1|AAA28078.1| 640|Caenorhabditis elegans protein (
C.elegans heat shockprotein 70A gene, complete cds. ).
Length = 640
Score = 118 bits (284), Expect = 1e-27
Identities = 56/119 (47%), Positives = 80/119 (67%)
Frame = +2
Query: 11 QIEVTFEIDANGILQVSAEDKGTGNREKIVITNDQNRLTPEDIERMIXXXXXXXXXXXXX 190
QIEVTF+IDANGIL VSA DK TG ++I ITND++R + +DIERM+
Sbjct: 474 QIEVTFDIDANGILNVSATDKSTGKAKQITITNDKDRFSKDDIERMVNEAEKYKADDEAQ 533
Query: 191 XXRVESRNELESYAYSIKNQLQDKEKLGSKLSDDEKTKMEEAIDVAIKWLEDNQDADSE 367
R+ ++N LESYA+++K ++D EKL K+S ++K K+E+ D +KWL+ NQ A+ E
Sbjct: 534 KDRIGAKNGLESYAFNLKQTIED-EKLKDKISPEDKKKIEDKCDEILKWLDSNQTAEKE 591
>Z83108-5|CAB05508.1| 645|Caenorhabditis elegans Hypothetical
protein F44E5.5 protein.
Length = 645
Score = 109 bits (262), Expect = 6e-25
Identities = 53/119 (44%), Positives = 77/119 (64%)
Frame = +2
Query: 11 QIEVTFEIDANGILQVSAEDKGTGNREKIVITNDQNRLTPEDIERMIXXXXXXXXXXXXX 190
QIEVTF+IDANGIL VSAEDK TG +I I N++ RLT DI+RM+
Sbjct: 474 QIEVTFDIDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSDIDRMVHEAKQFEKEDGEQ 533
Query: 191 XXRVESRNELESYAYSIKNQLQDKEKLGSKLSDDEKTKMEEAIDVAIKWLEDNQDADSE 367
RV++RN+LE+YA+ IK L ++ SKLS ++ ++ +EA+D ++WL+ N A+ +
Sbjct: 534 RERVQARNQLEAYAFQIKQAL---DEYSSKLSTEDASRAKEAVDETLRWLDSNSLAEKD 589
>Z83108-4|CAB05507.1| 645|Caenorhabditis elegans Hypothetical
protein F44E5.4 protein.
Length = 645
Score = 109 bits (262), Expect = 6e-25
Identities = 53/119 (44%), Positives = 77/119 (64%)
Frame = +2
Query: 11 QIEVTFEIDANGILQVSAEDKGTGNREKIVITNDQNRLTPEDIERMIXXXXXXXXXXXXX 190
QIEVTF+IDANGIL VSAEDK TG +I I N++ RLT DI+RM+
Sbjct: 474 QIEVTFDIDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSDIDRMVHEAKQFEKEDGEQ 533
Query: 191 XXRVESRNELESYAYSIKNQLQDKEKLGSKLSDDEKTKMEEAIDVAIKWLEDNQDADSE 367
RV++RN+LE+YA+ IK L ++ SKLS ++ ++ +EA+D ++WL+ N A+ +
Sbjct: 534 RERVQARNQLEAYAFQIKQAL---DEYSSKLSTEDASRAKEAVDETLRWLDSNSLAEKD 589
>Z81467-1|CAB03871.1| 643|Caenorhabditis elegans Hypothetical
protein C12C8.1 protein.
Length = 643
Score = 100 bits (239), Expect = 4e-22
Identities = 48/119 (40%), Positives = 74/119 (62%)
Frame = +2
Query: 11 QIEVTFEIDANGILQVSAEDKGTGNREKIVITNDQNRLTPEDIERMIXXXXXXXXXXXXX 190
Q++VTF+IDANGIL VSA DK TG +I I N++ RL+ DI+RM+
Sbjct: 474 QVDVTFDIDANGILNVSAADKSTGRSNRITIRNEKGRLSQADIDRMVNEAKQFEREDAAQ 533
Query: 191 XXRVESRNELESYAYSIKNQLQDKEKLGSKLSDDEKTKMEEAIDVAIKWLEDNQDADSE 367
R+ SRN+LE+YA+ +K L E+ GS LS ++ + ++A++ ++W+E N AD +
Sbjct: 534 RDRISSRNQLEAYAFQVKQAL---EEHGSLLSAEDAKRAKDAVEDTLRWMERNTLADKD 589
>U88315-3|AAB42371.1| 657|Caenorhabditis elegans Heat shock protein
protein 6 protein.
Length = 657
Score = 58.0 bits (134), Expect = 2e-09
Identities = 38/118 (32%), Positives = 58/118 (49%)
Frame = +2
Query: 11 QIEVTFEIDANGILQVSAEDKGTGNREKIVITNDQNRLTPEDIERMIXXXXXXXXXXXXX 190
Q+EVTF+IDANGI+ VSA D+GTG ++IVI L+ + IE MI
Sbjct: 496 QVEVTFDIDANGIVNVSARDRGTGKEQQIVI-QSSGGLSKDQIENMIKEAEKNAAEDAKR 554
Query: 191 XXRVESRNELESYAYSIKNQLQDKEKLGSKLSDDEKTKMEEAIDVAIKWLEDNQDADS 364
VE N+ E + + ++ + +L DE + I K + DN+D ++
Sbjct: 555 KELVEVINQAEGIIHDTEAKMTE---FADQLPKDECEALRTKI-ADTKKILDNKDNET 608
>Z81113-10|CAB54300.1| 607|Caenorhabditis elegans Hypothetical
protein F11F1.1 protein.
Length = 607
Score = 45.2 bits (102), Expect = 1e-05
Identities = 29/112 (25%), Positives = 48/112 (42%)
Frame = +2
Query: 5 EAQIEVTFEIDANGILQVSAEDKGTGNREKIVITNDQNRLTPEDIERMIXXXXXXXXXXX 184
E+ +++T E+D NGILQ +A D T I D T +I+ M
Sbjct: 466 ESVVDITLEVDYNGILQATALDLNTKKAITTTILYDCCTYTQPEIDEMTSQSEEDRIFDE 525
Query: 185 XXXXRVESRNELESYAYSIKNQLQDKEKLGSKLSDDEKTKMEEAIDVAIKWL 340
R + + E AY K++L EK+ + + + + E ++ I WL
Sbjct: 526 HFKMRYKQLQKSEDMAYGYKHRL---EKVKGSVEPGKFSNLMETVEREISWL 574
>Z81059-7|CAB54217.1| 607|Caenorhabditis elegans Hypothetical
protein F11F1.1 protein.
Length = 607
Score = 45.2 bits (102), Expect = 1e-05
Identities = 29/112 (25%), Positives = 48/112 (42%)
Frame = +2
Query: 5 EAQIEVTFEIDANGILQVSAEDKGTGNREKIVITNDQNRLTPEDIERMIXXXXXXXXXXX 184
E+ +++T E+D NGILQ +A D T I D T +I+ M
Sbjct: 466 ESVVDITLEVDYNGILQATALDLNTKKAITTTILYDCCTYTQPEIDEMTSQSEEDRIFDE 525
Query: 185 XXXXRVESRNELESYAYSIKNQLQDKEKLGSKLSDDEKTKMEEAIDVAIKWL 340
R + + E AY K++L EK+ + + + + E ++ I WL
Sbjct: 526 HFKMRYKQLQKSEDMAYGYKHRL---EKVKGSVEPGKFSNLMETVEREISWL 574
>U28940-6|AAA68352.1| 925|Caenorhabditis elegans Hypothetical
protein T24H7.2 protein.
Length = 925
Score = 40.3 bits (90), Expect = 4e-04
Identities = 19/56 (33%), Positives = 32/56 (57%)
Frame = +2
Query: 197 RVESRNELESYAYSIKNQLQDKEKLGSKLSDDEKTKMEEAIDVAIKWLEDNQDADS 364
R NELES+ + L++ E ++D+EKTK+E+++ WLED+ D+
Sbjct: 693 RAAVENELESFNFECSQYLEETE-FTDYMADEEKTKLEDSVKRIRAWLEDDVTKDT 747
>Z67884-4|CAH60753.1| 905|Caenorhabditis elegans Hypothetical
protein T14G8.3b protein.
Length = 905
Score = 35.1 bits (77), Expect = 0.016
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +2
Query: 197 RVESRNELESYAYSIKNQLQDKEKLGSKLSDDEKTKMEEAIDVAIKWLEDNQDADSE 367
R E+ N LE Y + +L+D E+ +++EK + E + V W ED+ +++
Sbjct: 650 REEAMNRLEGLLYDLAVRLEDGEEYAEYATEEEKKAILEEVAVLKLWFEDDVSLETK 706
>Z67884-3|CAA91809.2| 921|Caenorhabditis elegans Hypothetical
protein T14G8.3a protein.
Length = 921
Score = 35.1 bits (77), Expect = 0.016
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +2
Query: 197 RVESRNELESYAYSIKNQLQDKEKLGSKLSDDEKTKMEEAIDVAIKWLEDNQDADSE 367
R E+ N LE Y + +L+D E+ +++EK + E + V W ED+ +++
Sbjct: 666 REEAMNRLEGLLYDLAVRLEDGEEYAEYATEEEKKAILEEVAVLKLWFEDDVSLETK 722
>Z81080-4|CAB03087.2| 224|Caenorhabditis elegans Hypothetical
protein F39H2.4 protein.
Length = 224
Score = 31.1 bits (67), Expect = 0.26
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Frame = +2
Query: 203 ESRNELESYAYSIKNQLQDKEKLGSKLSD---DEKTKMEEAIDVAIKWLEDNQDADS 364
E R + + S++ QLQD +KLS+ D + + E+A D + +LE N+D DS
Sbjct: 61 EDRVKCAAQRESLERQLQDLTATDNKLSEQKRDWEERQEKAYDELMSYLE-NEDVDS 116
>Z92782-13|CAI79170.1| 67|Caenorhabditis elegans Hypothetical
protein F14F8.14 protein.
Length = 67
Score = 28.3 bits (60), Expect = 1.8
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = +2
Query: 254 QDKEKLGSKLSDDEKTKMEEAIDVAIKWLEDNQDAD 361
QD E++ + ++ +E ++EEA D+A++ D + AD
Sbjct: 16 QDSERITTIIAREETLQLEEAHDIAMEQEADEEVAD 51
>AC024817-3|AAK68524.1| 482|Caenorhabditis elegans Hypothetical
protein Y54G2A.11a protein.
Length = 482
Score = 28.3 bits (60), Expect = 1.8
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +2
Query: 200 VESRNELESYAYSIKNQLQDKEKLGSKLSDDEKTKMEEAIDVAIKWLEDNQDADSE 367
+E+ +E E+ S + L D + S+ DDE E I+ AIK ED + D E
Sbjct: 114 IENDSESENSEDSEDSDLDD---VASESEDDEDLISSEEIEAAIKCKEDEEWMDEE 166
>U23517-1|AAB93336.1| 245|Caenorhabditis elegans Hypothetical
protein D1022.3 protein.
Length = 245
Score = 27.9 bits (59), Expect = 2.4
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -2
Query: 203 LLAPLASCRRQRISPRL*SSFRCLQALICFDRW*SQSFPGC 81
LL P+ S R ++ PRL ++ L+++ C D+ +F C
Sbjct: 84 LLRPMTSDRNGKLKPRLEAALNALKSVPCVDKQKLGAFGFC 124
>Z77669-5|CAK12563.1| 976|Caenorhabditis elegans Hypothetical protein
T07F10.1b protein.
Length = 976
Score = 27.5 bits (58), Expect = 3.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 245 NQLQDKEKLGSKLSDDEKTKMEEAIDVAIKWLEDN 349
+QL+ K K S+ KMEE+ +V + W E N
Sbjct: 927 DQLRKFRKKAPKASEFGLDKMEESAEVTVTWRETN 961
>Z77669-4|CAB01242.1| 988|Caenorhabditis elegans Hypothetical protein
T07F10.1a protein.
Length = 988
Score = 27.5 bits (58), Expect = 3.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 245 NQLQDKEKLGSKLSDDEKTKMEEAIDVAIKWLEDN 349
+QL+ K K S+ KMEE+ +V + W E N
Sbjct: 939 DQLRKFRKKAPKASEFGLDKMEESAEVTVTWRETN 973
>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
protein 1 protein.
Length = 1963
Score = 27.5 bits (58), Expect = 3.2
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +2
Query: 197 RVESRN-ELESYAYSIKNQLQDKEKLGSKLSDDEKTKMEEAIDVAIKWLEDNQDA 358
R+++RN ELE ++++L ++E+ K ++DE+ K E + + LE + A
Sbjct: 911 RLQTRNQELEYIVNDMRDRLSEEEQQNEK-NNDERRKQMETVRDLEEQLEQEEQA 964
>Z79604-3|CAD36502.1| 817|Caenorhabditis elegans Hypothetical
protein ZK662.3b protein.
Length = 817
Score = 26.6 bits (56), Expect = 5.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 263 EKLGSKLSDDEKTKMEEAIDVAIKWLEDNQDA 358
E +LSD+E KMEE +++ +W+ D+
Sbjct: 622 ENESRELSDEEIEKMEELTEISNQWISMRLDS 653
>Z79604-2|CAB01900.1| 780|Caenorhabditis elegans Hypothetical
protein ZK662.3a protein.
Length = 780
Score = 26.6 bits (56), Expect = 5.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 263 EKLGSKLSDDEKTKMEEAIDVAIKWLEDNQDA 358
E +LSD+E KMEE +++ +W+ D+
Sbjct: 585 ENESRELSDEEIEKMEELTEISNQWISMRLDS 616
>AF332205-1|AAK17976.1| 817|Caenorhabditis elegans nuclear receptor
NHR-48 protein.
Length = 817
Score = 26.6 bits (56), Expect = 5.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 263 EKLGSKLSDDEKTKMEEAIDVAIKWLEDNQDA 358
E +LSD+E KMEE +++ +W+ D+
Sbjct: 622 ENESRELSDEEIEKMEELTEISNQWISMRLDS 653
>AF332204-1|AAK17975.1| 519|Caenorhabditis elegans nuclear receptor
NHR-48 protein.
Length = 519
Score = 26.6 bits (56), Expect = 5.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 263 EKLGSKLSDDEKTKMEEAIDVAIKWLEDNQDA 358
E +LSD+E KMEE +++ +W+ D+
Sbjct: 324 ENESRELSDEEIEKMEELTEISNQWISMRLDS 355
>AF003136-10|AAK21378.2| 1281|Caenorhabditis elegans High incidence
of males (increasedx chromosome loss) protein 1, isoform
a protein.
Length = 1281
Score = 26.6 bits (56), Expect = 5.5
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -3
Query: 151 NHPFDVFRR*SVLIVGDHNLFPVARTFVLGRHLQDTVC 38
N P V+ R L H F +A T +L +H+ VC
Sbjct: 520 NFPESVYGRLVDLCQPSHKRFNIATTKILQKHMNSIVC 557
>AC006708-24|AAF60413.1| 660|Caenorhabditis elegans Hypothetical
protein Y110A7A.19 protein.
Length = 660
Score = 26.6 bits (56), Expect = 5.5
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +2
Query: 218 LESYAYSIKN----QLQDKEKLGSKLSDDEKTKMEEAIDVAIKWLEDNQDA 358
L S+ IKN +L D EK + SD++K + VAI WL + Q++
Sbjct: 316 LSSFHLIIKNIIDFKLLDNEK---RESDEQKKTYNHQLTVAISWLNEIQNS 363
>Z83216-4|CAB62781.1| 314|Caenorhabditis elegans Hypothetical
protein C08F11.5 protein.
Length = 314
Score = 26.2 bits (55), Expect = 7.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 77 TGNREKIVITNDQNRLTPEDIERMI 151
+GNREKIV +D + L+ DI ++
Sbjct: 93 SGNREKIVNGSDHSTLSMNDIHNLL 117
>AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform a protein.
Length = 1724
Score = 26.2 bits (55), Expect = 7.3
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +2
Query: 242 KNQLQDKEKLGSKLSDDEKTKMEEAIDVAIKWLEDNQDADSE 367
+N+ +D+E+ G D+E+ + E DVA+K E + +D E
Sbjct: 439 QNEEEDEEEEGE---DEEEEEENEQDDVAVKEEEQSDKSDEE 477
>AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform b protein.
Length = 1758
Score = 26.2 bits (55), Expect = 7.3
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +2
Query: 242 KNQLQDKEKLGSKLSDDEKTKMEEAIDVAIKWLEDNQDADSE 367
+N+ +D+E+ G D+E+ + E DVA+K E + +D E
Sbjct: 439 QNEEEDEEEEGE---DEEEEEENEQDDVAVKEEEQSDKSDEE 477
>U49944-2|AAA93416.1| 160|Caenorhabditis elegans Hypothetical
protein C39E6.2 protein.
Length = 160
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 248 QLQDKEKLGSKLSDDEKTKMEEAIDVAIKWLED 346
+ D L + LSDDE T + ID+ W D
Sbjct: 39 EFSDDGYLSAFLSDDELTDSGDEIDIGDVWFPD 71
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,227,971
Number of Sequences: 27780
Number of extensions: 126085
Number of successful extensions: 505
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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