Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_A24
         (144 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    23   5.5  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    23   5.5  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    23   7.3  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    22   9.6  

>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 55  NDFIRSYTFLHLHYDTD 105
           +D + SYTF    YDT+
Sbjct: 729 DDILLSYTFFEARYDTN 745


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 55  NDFIRSYTFLHLHYDTD 105
           +D + SYTF    YDT+
Sbjct: 729 DDILLSYTFFEARYDTN 745


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 43  YVRGNDFIRSYTFLHLHYD 99
           +V GN+++   + LHL Y+
Sbjct: 312 FVAGNEYLTFQSILHLSYE 330


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 31  FYLSYVRGNDFIRSYTFLHLHYDT 102
           F   ++RG+   + Y F+  H+DT
Sbjct: 618 FMKEFLRGSYIPQLYKFMSSHFDT 641


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 565,268
Number of Sequences: 5004
Number of extensions: 7061
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 2,362,478
effective HSP length: 28
effective length of database: 2,222,366
effective search space used: 42224954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)