Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_A24
         (144 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043700-3|AAB97572.3|  200|Caenorhabditis elegans Hypothetical ...    29   0.45 
AF038611-2|AAB92037.1|  224|Caenorhabditis elegans Hypothetical ...    29   0.45 
Z78064-8|CAO82042.1|  357|Caenorhabditis elegans Hypothetical pr...    27   1.8  
L23650-1|AAA27955.1| 1076|Caenorhabditis elegans Egg laying defe...    26   4.2  
U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crum...    25   9.7  

>AF043700-3|AAB97572.3|  200|Caenorhabditis elegans Hypothetical
           protein K09H9.8 protein.
          Length = 200

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 118 VFNIYLYHSANAKKYMIL*NRCHVHNSNKISSFTGLTLV 2
           +FN Y+   A   KY  +  +CHV N++K+     + LV
Sbjct: 17  LFNFYVDFQAENPKYRCVFGKCHVVNASKVLLLLEIFLV 55


>AF038611-2|AAB92037.1|  224|Caenorhabditis elegans Hypothetical
           protein E04A4.2 protein.
          Length = 224

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +2

Query: 50  VATIL*DHILFCICTMIQINVKYILSFVIV 139
           VATI+ DHI   +   +++N +YI++ +I+
Sbjct: 188 VATIIVDHIQSLLKMFVRVNKEYIITIIII 217


>Z78064-8|CAO82042.1|  357|Caenorhabditis elegans Hypothetical
           protein F57B1.9a protein.
          Length = 357

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 58  DFIRSYTFLHLHYDTDKC*IHIIFCD 135
           DF++S  FL + Y  D C   I+FC+
Sbjct: 119 DFVKSEAFLLISYIIDICHYTILFCN 144


>L23650-1|AAA27955.1| 1076|Caenorhabditis elegans Egg laying
           defective protein 45 protein.
          Length = 1076

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/27 (37%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = +3

Query: 9   VKPVKEL-ILFELCTWQRFYKIIYFFA 86
           VK +K++ +++E  +W+R  KII F++
Sbjct: 442 VKALKQVSVIYEAISWERIRKIIPFYS 468


>U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crumbs
           homolog protein 1 protein.
          Length = 1722

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
 Frame = -2

Query: 122 ICI*HLSVS*CKCKKVY---DLIKSLPRT 45
           ICI H   S CKCK  Y   + +  LP+T
Sbjct: 728 ICIDHWESSSCKCKPPYLKPNCVYFLPKT 756


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,062,347
Number of Sequences: 27780
Number of extensions: 39546
Number of successful extensions: 67
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 12,740,198
effective HSP length: 28
effective length of database: 11,962,358
effective search space used: 227284802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)