Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_A23
         (394 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz...    27   1.0  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    26   1.8  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   5.5  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   5.5  
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    24   7.3  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    24   7.3  
SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1...    24   9.7  

>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
           Fub2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 227 LCTLSDSTSHPLSCAVLIWHKPYRYVRLF 313
           +CT+  + S P+ C  ++W K Y + +LF
Sbjct: 180 VCTIRSTPSQPIHC--VVWAKSYFFPQLF 206


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 262 ELCCSYLA*TLSVCTSLSIRASGMHACCVY 351
           ELC +Y A  +   TS S RAS +H   V+
Sbjct: 327 ELCLAYHAKPVEDATSTSARASNLHLRIVF 356


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 173 YFFDLQLQHRVQHILIRRLCTLSDST 250
           YF DL  +++    ++ RLC+   ST
Sbjct: 82  YFIDLSKRYKCLEYIVERLCSTKVST 107


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 17   ISLFLRSVRYLRLWLLEIQT-TPSLQQLQPSLYFIL 121
            IS F+    YLRLW+  I +   ++     SLYF L
Sbjct: 2007 ISSFINENMYLRLWISHIASWIYAVASASGSLYFSL 2042


>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 279 IRTAQLRGCEVLSDNVQRRLIKICC 205
           + T  L GC  L+D V ++ I  CC
Sbjct: 401 LHTLSLSGCTKLTDEVLKQGIGPCC 425


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 221 RRLCTLSDSTSHPLSCA 271
           RRL T SDS+  P+SC+
Sbjct: 181 RRLRTFSDSSLSPVSCS 197


>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 486

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 237 NVQRRLIKICCT 202
           NVQ++ IK CCT
Sbjct: 352 NVQKKCIKYCCT 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,598,340
Number of Sequences: 5004
Number of extensions: 31125
Number of successful extensions: 79
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)