Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_A23
         (394 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0739 - 19833462-19834456,19835272-19835333,19835846-198359...    28   3.1  
11_01_0461 + 3569700-3572373,3572477-3572847                           27   7.1  
06_03_0590 + 22574985-22578018,22578125-22578469,22579171-225792...    26   9.4  

>09_04_0739 -
           19833462-19834456,19835272-19835333,19835846-19835937,
           19836271-19836540,19836795-19836913,19836947-19837778
          Length = 789

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 65  EIQTTPSLQQLQPSLYFILVLHSNLSREFLMTCTL 169
           E+ +T   Q  QP++   L LH+ LSR  ++T TL
Sbjct: 483 EVSSTAEEQNPQPAVERFLALHTALSRAAVITDTL 517


>11_01_0461 + 3569700-3572373,3572477-3572847
          Length = 1014

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +2

Query: 80  PSLQQLQPSLYFILVLHSNLS 142
           P+  +L P+LYF+ ++H+NL+
Sbjct: 161 PTDARLPPNLYFLWIVHNNLT 181


>06_03_0590 +
           22574985-22578018,22578125-22578469,22579171-22579217,
           22579450-22579573,22579622-22579686
          Length = 1204

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 306 RTYR*GLCQIRTAQLRGCEVLSDNVQRRLIKICCTLCCS 190
           + +  G C  + +    CE L +   R L+KI  TLCCS
Sbjct: 854 KVFNLGTCGAQRSFSVECEALRNIRHRNLVKI-ITLCCS 891


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,884,821
Number of Sequences: 37544
Number of extensions: 184999
Number of successful extensions: 391
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)