Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_A23
         (394 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81509-7|CAJ85751.1|  544|Caenorhabditis elegans Hypothetical pr...    28   2.7  
Z81509-6|CAB04153.2|  431|Caenorhabditis elegans Hypothetical pr...    28   2.7  
Z99942-3|CAB17071.2|  585|Caenorhabditis elegans Hypothetical pr...    27   4.8  
Z81454-8|CAD60404.1|  330|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AF260243-1|AAF97549.1|  338|Caenorhabditis elegans stearoyl-CoA ...    27   6.3  
AF022972-8|AAC48239.1|  338|Caenorhabditis elegans Fatty acid de...    27   6.3  

>Z81509-7|CAJ85751.1|  544|Caenorhabditis elegans Hypothetical
           protein F21A3.2b protein.
          Length = 544

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 394 HTHTHTCKGKTRRLRKHNRHAY 329
           H H  +   KTRR RKH+RH++
Sbjct: 520 HCHHKSHCDKTRRRRKHSRHSH 541


>Z81509-6|CAB04153.2|  431|Caenorhabditis elegans Hypothetical
           protein F21A3.2a protein.
          Length = 431

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 394 HTHTHTCKGKTRRLRKHNRHAY 329
           H H  +   KTRR RKH+RH++
Sbjct: 407 HCHHKSHCDKTRRRRKHSRHSH 428


>Z99942-3|CAB17071.2|  585|Caenorhabditis elegans Hypothetical
           protein H13N06.6 protein.
          Length = 585

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 140 SREFLMTCTLLYFFDLQLQHRVQHILIRRLCTLSDSTSH 256
           +R+F +T  L   F L L+ R  HI++RR  T  DS  +
Sbjct: 91  NRDFKITSDLQQDFQL-LRKRKDHIVVRRKLTTCDSRDY 128


>Z81454-8|CAD60404.1|  330|Caenorhabditis elegans Hypothetical
           protein B0391.12 protein.
          Length = 330

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = +2

Query: 59  LLEIQTTPSLQQLQPSLYFILVLHSNLSREFLMTC-TLLY--FFDLQLQHRVQHILIRRL 229
           LL++ TTP           I+ L+S    EF+ TC T+ Y   F + L     H + R L
Sbjct: 53  LLDLLTTPECFSKDSVFLIIINLNSTFVPEFVATCATVAYCSLFGMSLAIFAIHFVYRHL 112


>AF260243-1|AAF97549.1|  338|Caenorhabditis elegans stearoyl-CoA
           desaturase FAT-7 protein.
          Length = 338

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +3

Query: 69  FKRRHRYSSCNQACILFSSYIRIYHVNS**LVRFYIFSTFNY 194
           F+R+H +      C +  + I +Y       + FY+  TF Y
Sbjct: 189 FQRKHYFPLVILFCFILPTIIPVYFWKETAFIAFYVAGTFRY 230


>AF022972-8|AAC48239.1|  338|Caenorhabditis elegans Fatty acid
           desaturase protein 7 protein.
          Length = 338

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +3

Query: 69  FKRRHRYSSCNQACILFSSYIRIYHVNS**LVRFYIFSTFNY 194
           F+R+H +      C +  + I +Y       + FY+  TF Y
Sbjct: 189 FQRKHYFPLVILFCFILPTIIPVYFWKETAFIAFYVAGTFRY 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,844,566
Number of Sequences: 27780
Number of extensions: 178002
Number of successful extensions: 364
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)