Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_A22
         (301 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    47   5e-07
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   1.8  
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi...    25   1.8  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    25   3.1  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    24   4.2  
SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces...    24   4.2  
SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    24   5.5  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    23   7.3  
SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces pombe...    23   7.3  
SPAC17G8.04c |arc15|arc5, arc5|ARP2/3 actin-organizing complex s...    23   9.6  
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory...    23   9.6  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    23   9.6  

>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 204

 Score = 47.2 bits (107), Expect = 5e-07
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
 Frame = +3

Query: 18  AWGWNSERKMEEMTDESAWYLIAKEKTGTNLA-FSHFRFDLDFGEPVLYCYEVQVETAGR 194
           ++GW+   K++EM  E   Y+   EKT   L  F  F   ++ G   LY YE+Q++   R
Sbjct: 68  SFGWDDSEKLKEMEMEKLEYICIFEKTSKKLVGFLSFEDTVEAGLTCLYIYEIQLDEHIR 127

Query: 195 RLGLGQRVLCVLEKLAHMTHMRCVRLTALTHNPSA 299
              +G+ +L     LA+  +++ + LT  + N +A
Sbjct: 128 GRNVGKWLLKNASILAYRRNLKYIFLTVFSANLNA 162


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 132 DLDFGEPVLYCYEVQVETAGRRLGL 206
           D DF EP L CY+V  +T+  R GL
Sbjct: 521 DTDF-EPGLQCYQVGSDTSVLRYGL 544


>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = -1

Query: 136 RSKRKCEKARFVPVFSLAMRYHADSSVISSIFRSLFHPQAHVSL 5
           RSKR   +A F P  +LAM     + ++S I ++ + P+ +VSL
Sbjct: 6   RSKRGMARAEFQPTDTLAM---LSAKILSDILKNDYSPE-NVSL 45


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 165 YEVQVETAGRRLGLGQRVLCVLEKLAHMTHMRCVRL 272
           YEV V T    L +  + LCV   LA  T++R  +L
Sbjct: 734 YEVAVSTLSEILAVRSKELCVQVSLAE-TYVRLAKL 768


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 73  HADSSVISSIFRSLFHPQAHV 11
           H+ ++ ISSI++ L HPQ  +
Sbjct: 370 HSYNTCISSIYKPLDHPQVSI 390


>SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 356

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 165 SNKVQVLQNLGQNENVRKPGLCQSFLWL 82
           S  V  L N+ QNE VRK  +   FL L
Sbjct: 63  SQAVTALVNVSQNEKVRKVLMDDEFLQL 90


>SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 126

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 134 PRFWRTCTLLLRGS 175
           PR WR CTL   GS
Sbjct: 28  PRRWRNCTLQRHGS 41


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 120 HFRFDLDFGEPVLYCYEVQVET 185
           +F F++ F  PV  CY++ VET
Sbjct: 572 YFIFNVPF--PVFLCYDILVET 591


>SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 139

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 155 TLLLRGSSRNRWSSTRFGSTRAMCTRKTRAYDT 253
           TLL      NR    RF  T+    R  R+Y+T
Sbjct: 12  TLLRSARCMNRMPQLRFEHTKGDLKRVNRSYET 44


>SPAC17G8.04c |arc15|arc5, arc5|ARP2/3 actin-organizing complex
           subunit Arc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -1

Query: 115 KARFVPVFSLAMRYHADSSVISSIFRSLFHPQAHVSLV 2
           +A  +P F          ++++ I+R L +PQA+ S V
Sbjct: 88  RAADIPAFVKECSTEEIDNIVNFIYRGLANPQAYNSSV 125


>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
           subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 545

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 111 AFSHFRFDLDFGEP-VLYCYEVQVETAG 191
           AF HFRF LD  +P V +  + Q++  G
Sbjct: 148 AFPHFRFYLDGCDPSVAHRVKKQIQQLG 175


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 30  NSERKMEEMTDESAWYLIAKEKTGTNLAF 116
           N E  ME++    AW +  KEK+  N ++
Sbjct: 849 NEEEIMEQIETFKAWSMKFKEKSSGNPSY 877


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,407,719
Number of Sequences: 5004
Number of extensions: 26839
Number of successful extensions: 72
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)