Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_A21
(379 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 26 1.7
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ... 25 3.9
SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|... 25 3.9
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe... 25 5.2
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 25 5.2
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 24 6.9
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 24 6.9
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 24 9.1
SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy... 24 9.1
SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces po... 24 9.1
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 26.2 bits (55), Expect = 1.7
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +3
Query: 108 SHFISKVACQSLPCYSPRLLEHTKSRRNPRHLVQINDTSSQSTFCRVVQ*ILRRGLLYCL 287
S I K +SLP Y P T R L+ ++T+ + +C+ + +L L+YC
Sbjct: 258 SEEIEKDLTRSLPDY-PAYQSPTGINTLRRILLFYSETNKEVGYCQAMNIVLAALLVYCT 316
Query: 288 KLPSHLL 308
+ ++ L
Sbjct: 317 EEQAYFL 323
>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 448
Score = 25.0 bits (52), Expect = 3.9
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 111 HFISKVACQSLPCYSPRLLEHT 176
+FI+ +AC SL C+S L+ ++
Sbjct: 418 NFITSIACLSLLCFSASLMANS 439
>SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 160
Score = 25.0 bits (52), Expect = 3.9
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = -2
Query: 330 LIGVGTSSASVMAASSNRAAPFAEFTERRDRRYSANLYR*SALNG 196
+ +G S +A ++ + ++ER+ +S+ LY SAL+G
Sbjct: 48 IYSMGKKSFPFLAIANALVQGYLSYSERKRSIFSSKLYAISALSG 92
>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 24.6 bits (51), Expect = 5.2
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +3
Query: 108 SHFISKVACQSLPCYSPRLLEHTKSRRNPRHLVQIND-TSSQSTFCRVVQ*ILRRGLLYC 284
SH +S++ +S CY PR+ H L +++D RV + I + G +
Sbjct: 47 SHEMSQILKKSGLCYDPRMRFHAT-------LSEVDDHPEDPRRVLRVFEAIKKAGYVSN 99
Query: 285 LKLPSHLLMMCPHRSA 332
+ PS + + P R A
Sbjct: 100 VPSPSDVFLRIPAREA 115
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 24.6 bits (51), Expect = 5.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 375 ESDSDVTYFLPFIAMLIGVGTSSA 304
++D DV Y F L+G GTS+A
Sbjct: 697 DNDLDVAYNAIFAMGLVGAGTSNA 720
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 24.2 bits (50), Expect = 6.9
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -3
Query: 293 QLQAIEQPPSQNSLNDA 243
QLQ+ PPS LNDA
Sbjct: 244 QLQSFNYPPSLKKLNDA 260
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 24.2 bits (50), Expect = 6.9
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -2
Query: 204 LNG-EGFFCSLYVLIIEESNKEVTGRPP 124
LNG EG F S YV ++E+S + PP
Sbjct: 182 LNGKEGIFPSNYVRLLEDSAVKAQPPPP 209
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 23.8 bits (49), Expect = 9.1
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = +1
Query: 13 VRFCPMRTHGMRHVDCYSCG 72
VR CP + + +CY CG
Sbjct: 70 VRDCPSSPNPRQGAECYKCG 89
>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 410
Score = 23.8 bits (49), Expect = 9.1
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 86 AADETDSKSLHFEGGLP 136
A DE + S+HFE G P
Sbjct: 217 APDEVEELSIHFEKGAP 233
>SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 295
Score = 23.8 bits (49), Expect = 9.1
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -1
Query: 379 YGVRFRRYVFLAFYRYADRC 320
Y + RY FLA Y Y +C
Sbjct: 181 YALSLVRYSFLASYHYMKKC 200
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,561,670
Number of Sequences: 5004
Number of extensions: 28173
Number of successful extensions: 83
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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