Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_A21
         (379 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0727 + 31264798-31265297,31265962-31266417,31266503-31266938     31   0.40 
04_04_1218 - 31822915-31823141,31823418-31823832,31824090-318244...    28   2.1  
04_04_0981 + 29912275-29912814                                         27   3.7  
01_07_0030 + 40601063-40601182,40601684-40602116,40602217-406023...    27   3.7  
10_08_0735 - 20200229-20200693,20200813-20201823,20202172-202022...    27   4.9  
04_04_1107 - 30954647-30954769,30955052-30955141,30955309-309556...    27   6.5  
03_06_0434 + 33894664-33895173                                         26   8.6  
03_02_0127 + 5777564-5779879                                           26   8.6  

>02_05_0727 + 31264798-31265297,31265962-31266417,31266503-31266938
          Length = 463

 Score = 30.7 bits (66), Expect = 0.40
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +2

Query: 11  GYVFALCEHMGCGTWTVTHAEGV--LLAADETDSKSLHFEGG 130
           G+VF  C+H+  GT TVTH   +    AA    +K    EGG
Sbjct: 261 GWVFPKCDHVAVGTGTVTHKPDIKKFQAATRLRAKD-RIEGG 301


>04_04_1218 - 31822915-31823141,31823418-31823832,31824090-31824440,
            31825391-31825549,31825965-31826093,31826257-31826460,
            31827200-31827412,31827547-31830912,31830999-31831150,
            31831912-31832407,31832646-31833456,31833537-31834728,
            31834856-31834922
          Length = 2593

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +2

Query: 65   HAEGVLLAADETDSKSLHFEGGLPVTSLLLSSIIRTYKEQKKPSPF 202
            H++G+LL++ E  +     E  +    + LSS ++++  Q KP PF
Sbjct: 1732 HSDGILLSSPEEQNVVSCLEYAILKNIVELSSEVQSHLNQLKPIPF 1777


>04_04_0981 + 29912275-29912814
          Length = 179

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 1   ARGWVRFCPMRTHGMRHVDCYSCGGCAAG 87
           +RGW RF P     +RH    + G C  G
Sbjct: 149 SRGWGRFIPGSIKALRHRKSRAAGDCREG 177


>01_07_0030 +
           40601063-40601182,40601684-40602116,40602217-40602326,
           40602506-40602550
          Length = 235

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 134 PVTSLLLSSIIRTYKEQKKPSPFSADQRYKFA--EYLLSRR 250
           P T++  +S+  TY    +P P+  D RY     E L+SRR
Sbjct: 67  PSTNITDNSLSETYHLVSRPPPYDTDPRYARVQREGLVSRR 107


>10_08_0735 -
           20200229-20200693,20200813-20201823,20202172-20202272,
           20203424-20203562
          Length = 571

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 114 FISKVACQSLPCYSPRLLEHTKSRRNPRHLVQINDTSSQSTF 239
           F  K+AC  +PC + +LL   + RR     + ++D  + STF
Sbjct: 266 FCHKIACLKIPC-TLQLLNFLRVRRCNMLQIIVSDAPNLSTF 306


>04_04_1107 -
           30954647-30954769,30955052-30955141,30955309-30955617,
           30955732-30955842,30955945-30956379,30956452-30956610,
           30957044-30957994,30959016-30959483
          Length = 881

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 318 GTSSASVMAASSNRAAPFAEFTERR 244
           G + ASV+ ASSNR  P AE +  R
Sbjct: 414 GNADASVLPASSNREMPQAEQSPHR 438


>03_06_0434 + 33894664-33895173
          Length = 169

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 19/48 (39%), Positives = 23/48 (47%)
 Frame = -2

Query: 333 MLIGVGTSSASVMAASSNRAAPFAEFTERRDRRYSANLYR*SALNGEG 190
           M     TSSAS   ASS RA+  A  +ERR+ R +      S    EG
Sbjct: 1   MASSAATSSASTQNASSRRAST-ASGSERRNSRSTGLAQARSVSRAEG 47


>03_02_0127 + 5777564-5779879
          Length = 771

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +3

Query: 288 KLPSHLLMMCPHRSA*R*KARNT*RRNLT 374
           KLPSHL  +  HRSA   ++++  +RNL+
Sbjct: 68  KLPSHLNNLTLHRSAILDRSKDVRQRNLS 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,843,330
Number of Sequences: 37544
Number of extensions: 207127
Number of successful extensions: 601
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)