Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_A21
         (379 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF117754-1|AAD22032.1| 2174|Homo sapiens thyroid hormone recepto...    29   6.6  
AB011165-1|BAA25519.2| 2005|Homo sapiens KIAA0593 protein protein.     29   6.6  
U79754-1|AAF21464.1|  600|Homo sapiens proline oxidase 2 protein.      28   8.8  

>AF117754-1|AAD22032.1| 2174|Homo sapiens thyroid hormone
            receptor-associated protein complex component TRAP240
            protein.
          Length = 2174

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +3

Query: 78   CCWPLMKLIPSHFISKVACQSLPC-YSPRLLEHTKSRRNPRHLVQINDTSSQSTFCR 245
            C   +++ +P H  S V+ Q +PC Y  + ++H      P+HL  +    S  T CR
Sbjct: 1669 CFLEMVQTLPPHIKSTVSVQIIPCQYLLQPVKHEDREIYPQHLKSL--AFSAFTQCR 1723


>AB011165-1|BAA25519.2| 2005|Homo sapiens KIAA0593 protein protein.
          Length = 2005

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +3

Query: 78   CCWPLMKLIPSHFISKVACQSLPC-YSPRLLEHTKSRRNPRHLVQINDTSSQSTFCR 245
            C   +++ +P H  S V+ Q +PC Y  + ++H      P+HL  +    S  T CR
Sbjct: 1500 CFLEMVQTLPPHIKSTVSVQIIPCQYLLQPVKHEDREIYPQHLKSL--AFSAFTQCR 1554


>U79754-1|AAF21464.1|  600|Homo sapiens proline oxidase 2 protein.
          Length = 600

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 36  TWDAARGLLLMRRVCCWPLM 95
           TW+ AR LL++R +C WP +
Sbjct: 67  TWELARSLLVLR-LCAWPAL 85


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,834,914
Number of Sequences: 237096
Number of extensions: 1036068
Number of successful extensions: 6204
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6203
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2536788584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)