Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_A20
         (401 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              27   0.11 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   4.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   5.3  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   6.9  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    20   9.2  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 26.6 bits (56), Expect = 0.11
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +2

Query: 71  SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 181
           +DT+   K KI  K  I PD + L+   KQ E G TL
Sbjct: 732 TDTVLAYKPKILGKPTISPDSRHLVTLDKQ-ETGVTL 767


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 378 VHSRRSRWILPFSSTL*YRRTPS 310
           + SR  R+   FSS++  RR+PS
Sbjct: 17  IRSRSRRYSKRFSSSIVDRRSPS 39


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -2

Query: 400  SGAALFARALAPQPV 356
            +GAA++AR +AP  +
Sbjct: 1268 TGAAVYARVIAPTTI 1282


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 338 DENGKIHRLRRECTGEQ 388
           + +GK+HR  R  TGE+
Sbjct: 158 EHSGKLHRHMRIHTGER 174


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -1

Query: 215 GASTPSGYCNQRGFDHL 165
           G   P GY   +GF HL
Sbjct: 78  GLEEPKGYTLFKGFVHL 94


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,609
Number of Sequences: 438
Number of extensions: 1818
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)