Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_A19
(418 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 206 8e-55
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 206 8e-55
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 206 8e-55
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 79 2e-16
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 51 6e-08
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S... 28 0.67
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 1.5
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 26 2.0
SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce... 26 2.0
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 26 2.7
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 25 3.6
SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit |Sc... 25 3.6
SPBC1718.05 |trs31||TRAPP complex subunit Trs31 |Schizosaccharom... 25 4.7
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 25 4.7
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c... 25 4.7
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 25 4.7
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch... 25 6.2
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 25 6.2
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc... 25 6.2
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 24 8.2
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 8.2
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 24 8.2
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 206 bits (504), Expect = 8e-55
Identities = 94/136 (69%), Positives = 115/136 (84%)
Frame = +2
Query: 8 AFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGD 187
A+TLGVKQLIV VNKMD+T +S++RFEEI KE S++IKK+G+NP V FVP+SG+ GD
Sbjct: 140 AYTLGVKQLIVAVNKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGD 197
Query: 188 NMLEPSFKMPWFKGWLVERK*GKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGI 367
NM+EP+ MPW++GW E K G +GK L+EA+D+I PPARPTDK LRLPLQDVYKIGGI
Sbjct: 198 NMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGI 257
Query: 368 GTVPVGRVETGILKPG 415
GTVPVGRVETG++KPG
Sbjct: 258 GTVPVGRVETGVIKPG 273
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 206 bits (504), Expect = 8e-55
Identities = 94/136 (69%), Positives = 115/136 (84%)
Frame = +2
Query: 8 AFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGD 187
A+TLGVKQLIV VNKMD+T +S++RFEEI KE S++IKK+G+NP V FVP+SG+ GD
Sbjct: 140 AYTLGVKQLIVAVNKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGD 197
Query: 188 NMLEPSFKMPWFKGWLVERK*GKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGI 367
NM+EP+ MPW++GW E K G +GK L+EA+D+I PPARPTDK LRLPLQDVYKIGGI
Sbjct: 198 NMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGI 257
Query: 368 GTVPVGRVETGILKPG 415
GTVPVGRVETG++KPG
Sbjct: 258 GTVPVGRVETGVIKPG 273
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 206 bits (504), Expect = 8e-55
Identities = 94/136 (69%), Positives = 115/136 (84%)
Frame = +2
Query: 8 AFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGD 187
A+TLGVKQLIV VNKMD+T +S++RFEEI KE S++IKK+G+NP V FVP+SG+ GD
Sbjct: 140 AYTLGVKQLIVAVNKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGD 197
Query: 188 NMLEPSFKMPWFKGWLVERK*GKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGI 367
NM+EP+ MPW++GW E K G +GK L+EA+D+I PPARPTDK LRLPLQDVYKIGGI
Sbjct: 198 NMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGI 257
Query: 368 GTVPVGRVETGILKPG 415
GTVPVGRVETG++KPG
Sbjct: 258 GTVPVGRVETGVIKPG 273
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 79.4 bits (187), Expect = 2e-16
Identities = 52/131 (39%), Positives = 73/131 (55%), Gaps = 3/131 (2%)
Frame = +2
Query: 17 LGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSY-IKKIGYNPAAVAFVPISGWHGDNM 193
LG+ +++V VNK+D +SE RF+EIK VS + IK +G+ + V FVPIS G N+
Sbjct: 313 LGISEIVVSVNKLDLMS--WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNL 370
Query: 194 LEP--SFKMPWFKGWLVERK*GKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGI 367
++ S W+KG L+ ALD ++PP +P K LRL + DVY+
Sbjct: 371 IQKDSSDLYKWYKG------------PTLLSALDQLVPPEKPYRKPLRLSIDDVYRSPRS 418
Query: 368 GTVPVGRVETG 400
TV GRVE G
Sbjct: 419 VTV-TGRVEAG 428
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 51.2 bits (117), Expect = 6e-08
Identities = 44/135 (32%), Positives = 66/135 (48%), Gaps = 2/135 (1%)
Frame = +2
Query: 17 LGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNM- 193
+GVKQ++V +NK+D EP E E+++ +S Y G+ GDN
Sbjct: 167 VGVKQIVVYINKVDMVEPDMIELVEMEMRELLSEY-----------------GFDGDNTP 209
Query: 194 LEPSFKMPWFKGWLVERK*GKAEGKCLIEALDAILP-PARPTDKALRLPLQDVYKIGGIG 370
+ + +G E + G L+EA+D+ + P R TD + ++DV+ I G G
Sbjct: 210 IVSGSALCALEGR--EPEIGLNSITKLMEAVDSYITLPERKTDVPFLMAIEDVFSISGRG 267
Query: 371 TVPVGRVETGILKPG 415
TV GRVE G LK G
Sbjct: 268 TVVTGRVERGTLKKG 282
>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 27.9 bits (59), Expect = 0.67
Identities = 19/67 (28%), Positives = 28/67 (41%)
Frame = +3
Query: 93 RKSRRKSLPTSRKLVTIRLPSLSYPFLAGTEITCWSRLSKCHGSRDGWLSVNEERLKVNA 272
RK S+P + L+T P +S P + W L C S + W V+
Sbjct: 333 RKLEFDSIPFNCPLITQLFPLISSP-----KEMAWLLLIVCTDSNESWFPVHAYINTKTR 387
Query: 273 LLRPSTP 293
+LRP +P
Sbjct: 388 ILRPRSP 394
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 26.6 bits (56), Expect = 1.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 60 PLSHHTVSLDLRKSRRKSLPTSRKLVTIRLPSLS 161
P S +++ +K +LPTS K++T PS+S
Sbjct: 402 PTSFPSLTSSTKKIPSTTLPTSSKMITTTTPSVS 435
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1428
Score = 26.2 bits (55), Expect = 2.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 70 WLSGVHFVYSYNQLLDSECESLV 2
W++G H Y N L+S CE LV
Sbjct: 1214 WINGKHGSYCENNELNSGCELLV 1236
>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 292
Score = 26.2 bits (55), Expect = 2.0
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +3
Query: 51 KWTPLSHHTVSLDLRKSRRKSLPTSRKLVTIRLPSLSYPFLAGTEITCWSRLSKCHGSRD 230
K TP + T ++++S++ L + + LP P++ T+I C L C +
Sbjct: 94 KQTPQNFLTRKEEVKESQKIDLYSDVRDQQTDLPLEKRPWI-NTDIVCKFFLEACETGKY 152
Query: 231 GWL 239
GWL
Sbjct: 153 GWL 155
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 25.8 bits (54), Expect = 2.7
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = -1
Query: 352 VYVLQGKTESLVSGASRRKDGVEGLNKAFTFSLSSFTLNQPSLEPWHFER 203
V++ Q + S++ G + + V LNKAF+ S + F + S P HF +
Sbjct: 1522 VWLSQAYSPSVLQGTT---ENVAFLNKAFSASANLFDVLPVSNTPSHFSK 1568
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 25.4 bits (53), Expect = 3.6
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 75 TVSLDLRKSRRKSLPTSRKLVTIRLPSLSYPFLAGTEITCWSRLSK 212
T+ +L + RK + + + RLPS+ PFL T RL +
Sbjct: 66 TLPRNLSRDARKQIEITINHLVSRLPSIVLPFLVRRLTTIAGRLDR 111
>SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 138
Score = 25.4 bits (53), Expect = 3.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 62 TEPPYSESRFEEIKKEVSSYIKK 130
+EPP + S +E+ KKE+ I+K
Sbjct: 9 SEPPVNVSYYEQCKKELHEMIEK 31
>SPBC1718.05 |trs31||TRAPP complex subunit Trs31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 209
Score = 25.0 bits (52), Expect = 4.7
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 333 FPCKTYTKSAVLEQYPWVELKLV 401
FPCK S L QYP+ + L+
Sbjct: 173 FPCKASAHSVPLSQYPYRTVILI 195
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 25.0 bits (52), Expect = 4.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 228 DGWLSVNEERLKVNALLRPSTPSFRLLAPLTRLSVFP 338
D WL+ N + + + L PS PS L+P + ++ P
Sbjct: 203 DSWLTYNAQFAQNSPQLAPSIPSPMKLSPANQQAMPP 239
>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 25.0 bits (52), Expect = 4.7
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +3
Query: 63 LSHHTVSLDLRKSRRKSLPTSRKLVTIRLPSLSYPFLAGTEITCWSRL 206
LS+ T L + KSL ++ +T R+ +L+ P++ +CW+ L
Sbjct: 414 LSNDTNKLAVYMGFYKSLQSAGAAITYRMDTLNIPYM-NYFASCWALL 460
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.0 bits (52), Expect = 4.7
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = -1
Query: 343 LQGKTESLVSG-ASRRKDGV-EGLNKAFTFSLSSFTLNQPSLEPWHFERRLQHVISVPAR 170
+Q K LVS A+ + V G+ FTF S+ + E+ ++ VIS R
Sbjct: 874 IQNKALLLVSALANAAPEAVLHGVMPIFTFMGSTVLSRDDAFSIHVIEQTVKTVISALIR 933
Query: 169 NGYESDGSRIVTNFLD 122
G + D S +V+ F++
Sbjct: 934 LGKDFDSSLLVSCFVN 949
>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
3|||Manual
Length = 872
Score = 24.6 bits (51), Expect = 6.2
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = -1
Query: 295 DGVEGLNKAFTFSLSSFTLNQPSLEPWHFERRLQHVISVPARNGYESDGSRIVTNFLDV 119
D ++GL+K L L Q L+ F+R ++H+ S R + S+ V FL++
Sbjct: 577 DDIKGLSKDLFVQLLR-ELGQGHLKHG-FDRAIEHLSSFDPRRDFSSNTVEPVVKFLEL 633
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 24.6 bits (51), Expect = 6.2
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = -1
Query: 229 SLEPWHFERRLQHVISVPARNGYESDGSRIVTNFLDVGRDFLLDFL 92
SLEP RRL S ++ +G R + L +LDFL
Sbjct: 24 SLEPASSRRRLAEENSDEENEEFDEEGGRFFGSGLKKSEKTVLDFL 69
>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 24.6 bits (51), Expect = 6.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 266 YLQPFLIYAQPTIP*TMAF*KTAPTCYLRASQKWVR 159
Y+ P+ + P TM+F K P C S K+VR
Sbjct: 439 YIAPYWNFPSEPFPRTMSFSKMCPLCCTTLS-KFVR 473
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 24.2 bits (50), Expect = 8.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 269 CLIEALDAILPPARPTDKALRLPLQD 346
CLIE +AILP +DK L + +
Sbjct: 1349 CLIEKSNAILPHGSTSDKLFLLEIPE 1374
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 24.2 bits (50), Expect = 8.2
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 287 DAILPPARPTDKALRLPLQDVYKIGGIGTVPV 382
+ I P A+P+D+ L + + +GT+PV
Sbjct: 505 ERIEPEAKPSDETLTVRSSRDLSVHNVGTLPV 536
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 24.2 bits (50), Expect = 8.2
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -1
Query: 334 KTESLVSGASRRKDGVEGLNKAFTFSLSSFTLNQPSLEPWHF 209
+T L S +S + VEGLN SS N PS + HF
Sbjct: 309 ETSELSSTSSEQTSDVEGLNAYNNLGASSDIENAPSSQ-LHF 349
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,933,552
Number of Sequences: 5004
Number of extensions: 40826
Number of successful extensions: 179
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -