Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_A19
(418 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 229 8e-61
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 229 8e-61
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 216 5e-57
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 79 1e-15
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 79 1e-15
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 66 1e-11
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 48 4e-06
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 38 0.003
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 38 0.003
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 36 0.009
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 36 0.009
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 36 0.009
AL132876-29|CAF31497.1| 840|Caenorhabditis elegans Hypothetical... 28 2.4
AL132876-27|CAD21658.1| 906|Caenorhabditis elegans Hypothetical... 28 2.4
AF039042-10|AAC48252.2| 136|Caenorhabditis elegans Hypothetical... 27 4.1
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 27 5.5
U56961-6|AAK39299.1| 497|Caenorhabditis elegans Hypothetical pr... 27 5.5
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 27 5.5
Z77134-7|CAJ90503.1| 121|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z77134-6|CAB00872.2| 135|Caenorhabditis elegans Hypothetical pr... 27 7.2
U40414-3|AAA81406.1| 321|Caenorhabditis elegans Hypothetical pr... 27 7.2
AC006614-1|AAF39762.2| 472|Caenorhabditis elegans Hypothetical ... 27 7.2
U23515-7|AAK93859.3| 868|Caenorhabditis elegans Larp (rna bindi... 26 9.5
U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna bindi... 26 9.5
AF164625-1|AAD47816.1| 944|Caenorhabditis elegans tandem-array-... 26 9.5
AF022974-6|AAC48041.1| 944|Caenorhabditis elegans Tandem array ... 26 9.5
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 229 bits (559), Expect = 8e-61
Identities = 107/136 (78%), Positives = 117/136 (86%)
Frame = +2
Query: 8 AFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGD 187
A TLGVKQLIV NKMDSTEPP+SE+RF EI EVS +IKKIGYNP AV FVPISG++GD
Sbjct: 140 AQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGD 199
Query: 188 NMLEPSFKMPWFKGWLVERK*GKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGI 367
NMLE S MPWFKGW VERK G A GK L+EALD+I+PP RPTD+ LRLPLQDVYKIGGI
Sbjct: 200 NMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGI 259
Query: 368 GTVPVGRVETGILKPG 415
GTVPVGRVETGI+KPG
Sbjct: 260 GTVPVGRVETGIIKPG 275
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 229 bits (559), Expect = 8e-61
Identities = 107/136 (78%), Positives = 117/136 (86%)
Frame = +2
Query: 8 AFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGD 187
A TLGVKQLIV NKMDSTEPP+SE+RF EI EVS +IKKIGYNP AV FVPISG++GD
Sbjct: 140 AQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGD 199
Query: 188 NMLEPSFKMPWFKGWLVERK*GKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGI 367
NMLE S MPWFKGW VERK G A GK L+EALD+I+PP RPTD+ LRLPLQDVYKIGGI
Sbjct: 200 NMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGI 259
Query: 368 GTVPVGRVETGILKPG 415
GTVPVGRVETGI+KPG
Sbjct: 260 GTVPVGRVETGIIKPG 275
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 216 bits (528), Expect = 5e-57
Identities = 99/128 (77%), Positives = 110/128 (85%)
Frame = +2
Query: 32 LIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSFK 211
L+V NKMDSTEPP+SE+RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSN 173
Query: 212 MPWFKGWLVERK*GKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRV 391
MPWFKGW VERK G A GK L+EALD+I+PP RPTD+ LRLPLQDVYKIGGIGTVPVGRV
Sbjct: 174 MPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRV 233
Query: 392 ETGILKPG 415
ETGI+KPG
Sbjct: 234 ETGIIKPG 241
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 79.0 bits (186), Expect = 1e-15
Identities = 44/130 (33%), Positives = 79/130 (60%), Gaps = 1/130 (0%)
Frame = +2
Query: 14 TLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDN 190
+LGV QLIV VNK+D+ + +S+ RF+EIK +S ++ ++ G++ FVP+SG+ G+N
Sbjct: 305 SLGVTQLIVAVNKLDTVD--WSQDRFDEIKNNLSVFLTRQAGFSKPK--FVPVSGFTGEN 360
Query: 191 MLEPSFKMPWFKGWLVERK*GKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIG 370
+++ ++ W+ +G CL+E +D+ + P P+D LR+ + DV K+
Sbjct: 361 LIK-RMELDWY------------DGPCLLELIDSFVAPQPPSDGPLRIGISDVLKVASNQ 407
Query: 371 TVPVGRVETG 400
V G++E+G
Sbjct: 408 LVVSGKIESG 417
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 79.0 bits (186), Expect = 1e-15
Identities = 44/130 (33%), Positives = 79/130 (60%), Gaps = 1/130 (0%)
Frame = +2
Query: 14 TLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDN 190
+LGV QLIV VNK+D+ + +S+ RF+EIK +S ++ ++ G++ FVP+SG+ G+N
Sbjct: 323 SLGVTQLIVAVNKLDTVD--WSQDRFDEIKNNLSVFLTRQAGFSKPK--FVPVSGFTGEN 378
Query: 191 MLEPSFKMPWFKGWLVERK*GKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIG 370
+++ ++ W+ +G CL+E +D+ + P P+D LR+ + DV K+
Sbjct: 379 LIK-RMELDWY------------DGPCLLELIDSFVAPQPPSDGPLRIGISDVLKVASNQ 425
Query: 371 TVPVGRVETG 400
V G++E+G
Sbjct: 426 LVVSGKIESG 435
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 65.7 bits (153), Expect = 1e-11
Identities = 42/136 (30%), Positives = 72/136 (52%), Gaps = 2/136 (1%)
Frame = +2
Query: 14 TLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAA-VAFVPISGWHGDN 190
T GVK L++ VNKMD + E RF+EI+ +++ +++K+G+NP + +VP SG G
Sbjct: 244 TAGVKHLVILVNKMDDPTVKWEEERFKEIEGKLTPFLRKLGFNPKTDITYVPCSGLTG-- 301
Query: 191 MLEPSFKMPWFKGWLVERK*GKAEGKCLIEALDAILPP-ARPTDKALRLPLQDVYKIGGI 367
+ K + G C IE +D +LP R + +R + + Y +
Sbjct: 302 --------AFIKDRPTGSEGNWYSGPCFIEFIDVLLPSYKRDFNGPVRCTVAEKY--SEM 351
Query: 368 GTVPVGRVETGILKPG 415
GTV +G++E+G ++ G
Sbjct: 352 GTVIIGKMESGCVQKG 367
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 47.6 bits (108), Expect = 4e-06
Identities = 38/93 (40%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Frame = +3
Query: 96 KSRRKSLPTSRKLVTI-RLPSLSYPFLAGTEITCWSRLSKCHGSRDGWLSVNEERLKVNA 272
+S +S +SR+ TI RL LS TE TC CHGSRDG L+ +E L
Sbjct: 152 RSPTRSPDSSRRSDTIQRLFHLSQS-PDSTETTCLRSPRTCHGSRDGLLNARKETLPERP 210
Query: 273 LLRPSTPSFRLLAPLTRLSVFPCKTYTKSAVLE 371
R TPS A LT SVF + T+S LE
Sbjct: 211 SSRLLTPSSHHNAQLTDHSVFHSRMCTRSEELE 243
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 37.9 bits (84), Expect = 0.003
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = +2
Query: 272 LIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPG 415
LI+ALD++ P R +P+ I G GTV VG +E G+LK G
Sbjct: 222 LIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVGTLERGVLKKG 269
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 37.9 bits (84), Expect = 0.003
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = +2
Query: 272 LIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPG 415
LI+ALD++ P R +P+ I G GTV VG +E G+LK G
Sbjct: 222 LIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVGTLERGVLKKG 269
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 36.3 bits (80), Expect = 0.009
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 251 GKAEGKCLIEALD-AILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPG 415
G+ K L+E LD + P R ++ + VY I G GTV G++E GILK G
Sbjct: 226 GEEAVKQLLEVLDNKFVIPERKVNEEPMFAAEHVYSIVGRGTVITGKLERGILKRG 281
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 36.3 bits (80), Expect = 0.009
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 251 GKAEGKCLIEALD-AILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPG 415
G+ K L+E LD + P R ++ + VY I G GTV G++E GILK G
Sbjct: 227 GEEAVKQLLEVLDNKFVIPERKVNEEPMFAAEHVYSIVGRGTVITGKLERGILKRG 282
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 36.3 bits (80), Expect = 0.009
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 251 GKAEGKCLIEALD-AILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPG 415
G+ K L+E LD + P R ++ + VY I G GTV G++E GILK G
Sbjct: 227 GEEAVKQLLEVLDNKFVIPERKVNEEPMFAAEHVYSIVGRGTVITGKLERGILKRG 282
>AL132876-29|CAF31497.1| 840|Caenorhabditis elegans Hypothetical
protein Y105E8A.7b protein.
Length = 840
Score = 28.3 bits (60), Expect = 2.4
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -2
Query: 312 GRAGGRMAS--RASIRHLPSAFPHLRSTNHPLNHG 214
GR G +A R S+R + H RSTNH NHG
Sbjct: 121 GRYCGTVAPHVRISLRRVMKLVLHSRSTNHEDNHG 155
>AL132876-27|CAD21658.1| 906|Caenorhabditis elegans Hypothetical
protein Y105E8A.7a protein.
Length = 906
Score = 28.3 bits (60), Expect = 2.4
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -2
Query: 312 GRAGGRMAS--RASIRHLPSAFPHLRSTNHPLNHG 214
GR G +A R S+R + H RSTNH NHG
Sbjct: 121 GRYCGTVAPHVRISLRRVMKLVLHSRSTNHEDNHG 155
>AF039042-10|AAC48252.2| 136|Caenorhabditis elegans Hypothetical
protein ZK697.8 protein.
Length = 136
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +3
Query: 228 DGWLSVNEERLKVNALLRPSTPSFRLLAPLTRLSVFPCKTYTKSAVLEQYPWVEL 392
+GW ++ + + N + +P F L+ RL YT V YP+VE+
Sbjct: 54 NGWTNIGSQFTQDNGRVDWVSPDFTLIPGTYRLVYITEPYYTAKNVESFYPYVEV 108
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 59 STEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISG 175
ST P+ SRF I +V + +KK+ +P + V + G
Sbjct: 1525 STLLPFESSRFATITTDVLALMKKVAASPRILDVVNMQG 1563
>U56961-6|AAK39299.1| 497|Caenorhabditis elegans Hypothetical
protein T19D7.1 protein.
Length = 497
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -1
Query: 94 LKSRLTVWWLSGVHFVYSYN 35
+KS L ++WL V+F +SYN
Sbjct: 250 IKSLLHIFWLPHVYFPFSYN 269
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 59 STEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISG 175
ST P+ SRF I +V + +KK+ +P + V + G
Sbjct: 1525 STLLPFESSRFATITTDVLALMKKVAASPRILDVVNMQG 1563
>Z77134-7|CAJ90503.1| 121|Caenorhabditis elegans Hypothetical
protein R09H10.3b protein.
Length = 121
Score = 26.6 bits (56), Expect = 7.2
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 228 DGWLSVNEERLKVNALLRPSTPSFRLLAPLTRLSVFPCKTYTKSAVLEQ-YPWVEL 392
D W + E + N + +P F L+ RL V+ + Y K+ +E YP+VE+
Sbjct: 39 DDWTKIGSEFTQDNGRVDWVSPDFTLIPGTYRL-VYITEPYYKAKNVESFYPYVEV 93
>Z77134-6|CAB00872.2| 135|Caenorhabditis elegans Hypothetical
protein R09H10.3a protein.
Length = 135
Score = 26.6 bits (56), Expect = 7.2
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 228 DGWLSVNEERLKVNALLRPSTPSFRLLAPLTRLSVFPCKTYTKSAVLEQ-YPWVEL 392
D W + E + N + +P F L+ RL V+ + Y K+ +E YP+VE+
Sbjct: 53 DDWTKIGSEFTQDNGRVDWVSPDFTLIPGTYRL-VYITEPYYKAKNVESFYPYVEV 107
>U40414-3|AAA81406.1| 321|Caenorhabditis elegans Hypothetical
protein F53B3.6 protein.
Length = 321
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 172 RNGYESDGSRIVTNFLDVGRDFLLDFLKSRLT 77
RN Y +DG ++ D+GRD DF S T
Sbjct: 101 RNEYPNDGGVVIPIRRDIGRDPQYDFRSSPQT 132
>AC006614-1|AAF39762.2| 472|Caenorhabditis elegans Hypothetical
protein C34H3.1 protein.
Length = 472
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -1
Query: 289 VEGLNKAFTFSLSSFTLNQPSLEPWHFERRLQHVISVPARNGYES 155
V G+ + + SLS F N+P F + H++ VP R ES
Sbjct: 145 VNGMCSSHSVSLSGFYPNEPRAMGSIFFHEVAHLVGVPHRAVNES 189
>U23515-7|AAK93859.3| 868|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform a protein.
Length = 868
Score = 26.2 bits (55), Expect = 9.5
Identities = 18/60 (30%), Positives = 24/60 (40%)
Frame = -2
Query: 399 PVSTLPTGTVPIPPILYTSCRGRRRALSVGRAGGRMASRASIRHLPSAFPHLRSTNHPLN 220
P LP+GT P P ++T R A SV M R S + F + PL+
Sbjct: 581 PEIPLPSGTQPTPDSVWTKKAKERAAASVTVPKSPMQRRESEEQKMNRFYPISKPTAPLD 640
>U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform b protein.
Length = 1065
Score = 26.2 bits (55), Expect = 9.5
Identities = 18/60 (30%), Positives = 24/60 (40%)
Frame = -2
Query: 399 PVSTLPTGTVPIPPILYTSCRGRRRALSVGRAGGRMASRASIRHLPSAFPHLRSTNHPLN 220
P LP+GT P P ++T R A SV M R S + F + PL+
Sbjct: 778 PEIPLPSGTQPTPDSVWTKKAKERAAASVTVPKSPMQRRESEEQKMNRFYPISKPTAPLD 837
>AF164625-1|AAD47816.1| 944|Caenorhabditis elegans
tandem-array-modifier protein protein.
Length = 944
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 286 RRHPSACSPH*QGSPSSPARRIQNRR 363
+RHP+ QG P P +RIQN +
Sbjct: 542 QRHPNEGQQFQQGPPPPPPQRIQNHQ 567
>AF022974-6|AAC48041.1| 944|Caenorhabditis elegans Tandem array
expression modifierprotein 1 protein.
Length = 944
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 286 RRHPSACSPH*QGSPSSPARRIQNRR 363
+RHP+ QG P P +RIQN +
Sbjct: 542 QRHPNEGQQFQQGPPPPPPQRIQNHQ 567
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,631,958
Number of Sequences: 27780
Number of extensions: 226663
Number of successful extensions: 836
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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