Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_A17
         (172 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   0.45 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   0.59 
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    18   9.7  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 0.45
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 59  LLNVNFVNYLFCIIIFL 109
           LL+V  V +LF I+IFL
Sbjct: 22  LLSVLLVGFLFLILIFL 38


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 0.59
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +2

Query: 59  LLNVNFVNYLFCII 100
           + N+NF+ +LFC++
Sbjct: 277 IANLNFILHLFCLL 290


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 151 HLVSNSNFYFY 119
           HL S+SN Y Y
Sbjct: 35  HLKSHSNVYQY 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,570
Number of Sequences: 438
Number of extensions: 377
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 36
effective length of database: 130,575
effective search space used:  2611500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)