Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_A16
(386 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 166 1e-42
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 87 1e-18
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 74 9e-15
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 46 2e-06
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 34 0.007
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 28 0.44
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 0.59
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 26 1.8
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 2.4
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|... 24 9.6
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 24 9.6
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ... 24 9.6
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 166 bits (403), Expect = 1e-42
Identities = 77/92 (83%), Positives = 82/92 (89%), Gaps = 2/92 (2%)
Frame = +2
Query: 116 AALVVDNGSGM-SSRFRGNDAPARI-PSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 289
AALV+DNGSGM + F G+DAP + PSIVGRPRH G+MVGMGQKDSYVGDEAQSKRGIL
Sbjct: 6 AALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSKRGIL 65
Query: 290 RLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 385
LKYPIEHGIV NWDDMEKIWHHTFYNELRVA
Sbjct: 66 TLKYPIEHGIVNNWDDMEKIWHHTFYNELRVA 97
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 86.6 bits (205), Expect = 1e-18
Identities = 39/86 (45%), Positives = 60/86 (69%), Gaps = 2/86 (2%)
Frame = +2
Query: 122 LVVDNGSG-MSSRFRGNDAPARI-PSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILRL 295
+ +DNGSG + + F G+D P + P+ VGR +H+ VM QKD +VG EAQ+ RG+L++
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 296 KYPIEHGIVTNWDDMEKIWHHTFYNE 373
+ PIE GI+ NW DME+IW + + ++
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQ 97
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 73.7 bits (173), Expect = 9e-15
Identities = 36/94 (38%), Positives = 65/94 (69%), Gaps = 4/94 (4%)
Frame = +2
Query: 113 SAALVVDNGSG-MSSRFRGNDAPA-RIPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKR 280
SA +V+DNG+G + + ++ P + PSIVGRP R + + KD VGDEA++ R
Sbjct: 3 SAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVR 62
Query: 281 GILRLKYPIEHGIVTNWDDMEKIWHHTFYNELRV 382
+L++KYP+E+GI+ ++++M ++W +TF+ +L++
Sbjct: 63 SLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKI 96
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 46.4 bits (105), Expect = 2e-06
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 25/111 (22%)
Frame = +2
Query: 122 LVVDNGSGMSSR-FRGNDAPARIPSIVGRPRHQGVMVG---------MGQK--------- 244
+++DNG+G S + GNDAP+ + V R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSSKR 67
Query: 245 -----DSYVGDEAQSKRGI-LRLKYPIEHGIVTNWDDMEKIWHHTFYNELR 379
D ++G++A K L YPI HG + NWD ME+ W + + LR
Sbjct: 68 ATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLR 118
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 34.3 bits (75), Expect = 0.007
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Frame = +2
Query: 122 LVVDNGSG-MSSRFRGNDAPARI-PSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILRL 295
LV+DNGS + + + G P + ++V R R + + + + VG++ + G +
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSI 82
Query: 296 -KYPIEHGIVTNWDDMEKIWHHTF 364
+ P E +++NWD ME++ +TF
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTF 106
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 28.3 bits (60), Expect = 0.44
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Frame = +2
Query: 116 AALVVDNGSGMSS-RFRGNDAPARI-PSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 289
+A+V+D GS + F G D P + PS G + G + Y+ +S G +
Sbjct: 12 SAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNPG-M 63
Query: 290 RLKYPIEHGIVTNWDDMEKIWHHTFYNELR 379
+K I +G V NWD +W + +L+
Sbjct: 64 EIKNAIRNGWVENWDVTVDLWRYGLEQQLK 93
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 27.9 bits (59), Expect = 0.59
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Frame = +2
Query: 134 NGSGMSSRFRGNDAPARIP--SIVGRPRHQGVMVGMG-----QKDSYVGDEAQSKRGILR 292
N +GM +G+ + R P S VG + VG Q+DSY+ D++ S+R R
Sbjct: 318 NATGMYGVSKGHSSSTRRPFFSDVGSSQPAEEFVGSSSSHGRQQDSYIADDSDSERSYRR 377
Query: 293 LK 298
++
Sbjct: 378 VR 379
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.2 bits (55), Expect = 1.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 27 ALPRLYNSKLIYLFNRTIN*KLITMCD 107
A P + N KLIY + IN + + CD
Sbjct: 492 AAPEIKNEKLIYPLDDAINQSIFSACD 518
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.8 bits (54), Expect = 2.4
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +2
Query: 302 PIEHGIVTNWDDMEKIWHHTF 364
PI+ G V +W+ ++ W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 712
Score = 23.8 bits (49), Expect = 9.6
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = +1
Query: 283 YPQTQIPHRTRHRHQLGRYG 342
Y + PH+ +H LG YG
Sbjct: 307 YGNPEHPHQRKHAFDLGEYG 326
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 23.8 bits (49), Expect = 9.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -1
Query: 368 CRRCDARSSPYRPSW*RCRV 309
C+ CD + YR S +CRV
Sbjct: 161 CQNCDILNYSYRESCFKCRV 180
>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 622
Score = 23.8 bits (49), Expect = 9.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 330 QLVTMPCSMGYLSLRIPLLLCASSPT*ESF 241
+L+ MP S + R P L+C + T E+F
Sbjct: 501 KLLVMPISSFHCVQRFPDLVCVQTSTAETF 530
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,616,447
Number of Sequences: 5004
Number of extensions: 31757
Number of successful extensions: 81
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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