Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_A15
(384 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 33 0.012
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 33 0.012
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 29 0.33
SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73 family... 27 0.76
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 26 2.3
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa... 25 4.1
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ... 25 5.4
SPAC6C3.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 5.4
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac... 24 7.1
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 24 7.1
SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi... 24 7.1
SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1... 24 9.4
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po... 24 9.4
SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb... 24 9.4
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 33.5 bits (73), Expect = 0.012
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = -3
Query: 358 RLNQSIDSCLNEPSIPNSSS 299
++NQ +DSCLN PS P+SSS
Sbjct: 170 QINQHLDSCLNSPSSPSSSS 189
>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 33.5 bits (73), Expect = 0.012
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Frame = -2
Query: 302 IVVCWFSWSQRFVRLYRLLYFEPVSVIFE--FLKPRFVNFSEGTTIAAVFFR*HIYWYVF 129
++V W + + L R V+ + KP F F EG + +FF W+ F
Sbjct: 4 VIVAIVRWERAMIGLLRHCAARLVAFVNNTTISKPYFSTFFEGGIHSLLFFYPKRNWWFF 63
Query: 128 LQAFYIGMKIYLFFNFSF 75
++ Y+ FF FSF
Sbjct: 64 IKMRYLSFFFEFFFLFSF 81
>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 28.7 bits (61), Expect = 0.33
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Frame = -2
Query: 281 WSQRFVRLYRLLYFEPVSVIFEF-----LKPRFVNFSEGTTIAAVFFR*HIYWYVFLQAF 117
W+ FV Y + + VSVIF + P+ +N++ +A V +YW+ +
Sbjct: 465 WASHFVNAYAVCWTAFVSVIFLMPTVRPVTPQNMNYAV-VVLAGVLLFSLVYWWSGARKS 523
Query: 116 YIGMKI 99
YIG +I
Sbjct: 524 YIGPRI 529
>SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 371
Score = 27.5 bits (58), Expect = 0.76
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +3
Query: 210 KKLEDYRHWFKVQESIKADESLRPGKPTNYDELFGIEGSFRQL 338
K + DY H K S ADE RP K N D + + S L
Sbjct: 175 KDVLDYIHANKATASAHADEQERPAKKRNRDPIILLSPSASSL 217
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 25.8 bits (54), Expect = 2.3
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -2
Query: 323 AFNS--EQFIVVCWFSWSQRFVRLYRLLYFEPVSVIFEFLKPRFVN 192
AFNS ++ VVC + +Y + + VS + EF P FV+
Sbjct: 23 AFNSISDKIYVVCGLDNENPGIEIYEISENDDVSKLVEFDSPSFVS 68
>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
exchanger|Schizosaccharomyces pombe|chr 3|||Manual
Length = 412
Score = 25.0 bits (52), Expect = 4.1
Identities = 10/47 (21%), Positives = 24/47 (51%)
Frame = -2
Query: 302 IVVCWFSWSQRFVRLYRLLYFEPVSVIFEFLKPRFVNFSEGTTIAAV 162
++ WF W+ + V + +L P++ + F + ++ G T+ A+
Sbjct: 73 LIAGWFEWNAKSVFILNMLAIIPLASLLSFATEQ-LSIISGPTLGAL 118
>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 24.6 bits (51), Expect = 5.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 96 VYFHTDVKGLQKYIPVDMLPKEYGG 170
V F + + LQ+YI D + KE+GG
Sbjct: 300 VKFTRNYRDLQQYINPDNILKEFGG 324
>SPAC6C3.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 100
Score = 24.6 bits (51), Expect = 5.4
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -3
Query: 118 FTSV*KYTYF-LIFPSKRLVPNSAARG 41
FT+ +Y+ F +FPSK L PN G
Sbjct: 15 FTNAKRYSSFRFLFPSKNLDPNETKWG 41
>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
Rad4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 648
Score = 24.2 bits (50), Expect = 7.1
Identities = 18/68 (26%), Positives = 29/68 (42%)
Frame = +3
Query: 78 GKIKK*VYFHTDVKGLQKYIPVDMLPKEYGGNGCTLTEVNKAWLKKLEDYRHWFKVQESI 257
G+I + + D + Y PVD LP + VN+ W+++ Y+ F + E
Sbjct: 330 GQISEFLSSTIDFVVIPHYFPVDELPI------FSFPTVNEWWIERCLYYKKIFGIDEHA 383
Query: 258 KADESLRP 281
A RP
Sbjct: 384 LAKPFFRP 391
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 24.2 bits (50), Expect = 7.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 111 DVKGLQKYIPVDMLPKEYGGNGCTL 185
D G+ +P + KE+G GCTL
Sbjct: 110 DGAGVMTGMPYTFMQKEFGQIGCTL 134
>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
Sec14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 286
Score = 24.2 bits (50), Expect = 7.1
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 10/57 (17%)
Frame = +3
Query: 75 EGKIKK*VYFHTDVKG-LQKYIPVDMLPKEYGGN-----GCTLTEV----NKAWLKK 215
E +KK ++ K L + IP D LP + GGN GC L++ + W+ K
Sbjct: 229 EATVKKIHILGSNYKSALLEQIPADNLPAKLGGNCQCPGGCELSDAGPWHEEQWMNK 285
>SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 203
Score = 23.8 bits (49), Expect = 9.4
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +3
Query: 216 LEDYRHWFKVQESIKADESLRPGKPTNYDELFGIEGSFR 332
+ED ++ K+Q DE++ PG T G+ +F+
Sbjct: 51 IEDVDYYEKLQNFKIVDENIDPGLRTYSKRSVGVNNTFQ 89
>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 549
Score = 23.8 bits (49), Expect = 9.4
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +3
Query: 189 EVNKAWLKKLEDYRHWFKV-QESIKADESLRPGKPTNYDE 305
E N +W +D +H+ ESI D RP + +YD+
Sbjct: 274 ETNGSW-SSTDDTKHYKNEWAESINLDNFNRPSQQEDYDK 312
>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 23.8 bits (49), Expect = 9.4
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +3
Query: 36 VDPRAAEFGTRRFEGKIKK*VYFHTDVKGLQKYIPVDML--PKEYGGNGCTLTEVNKAWL 209
+DP + R E I + + T LQ Y+P D+L KE +G V +W+
Sbjct: 423 IDPEEKMYINGRKEKYILRKAFDTTHDSSLQPYLPQDILWRQKEQFSDG-----VGYSWI 477
Query: 210 KKLED 224
L+D
Sbjct: 478 DALKD 482
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,619,721
Number of Sequences: 5004
Number of extensions: 33357
Number of successful extensions: 99
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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