Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_A15
(384 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_03_0019 - 7123502-7123673,7124145-7124226,7124228-7124394,712... 29 1.7
02_01_0301 + 2011707-2015423,2016982-2017182,2017670-2017786,201... 28 2.2
05_05_0089 - 22305727-22306115,22306206-22306311,22306386-223067... 28 2.9
03_06_0589 + 34926560-34927198 27 3.8
06_03_1104 + 27623632-27623795,27624052-27624175,27624316-276248... 27 6.7
06_03_1085 + 27491735-27492754,27492854-27492978,27493088-274932... 27 6.7
05_04_0043 + 17450999-17451181,17451353-17451416,17451642-174517... 27 6.7
04_03_0975 - 21370715-21370877,21371227-21371319,21371383-213714... 27 6.7
04_04_1660 - 35140641-35141894 26 8.9
04_04_1589 - 34636563-34636856,34636982-34637159,34637349-346374... 26 8.9
>10_03_0019 -
7123502-7123673,7124145-7124226,7124228-7124394,
7124569-7125182
Length = 344
Score = 28.7 bits (61), Expect = 1.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 119 FYIGMKIYLFFNFSFKTPRAEFCSPGI 39
F++ M + F + SF TPR E PGI
Sbjct: 249 FHVDMSGFAFNSISFGTPRTEVIRPGI 275
>02_01_0301 +
2011707-2015423,2016982-2017182,2017670-2017786,
2018030-2018122
Length = 1375
Score = 28.3 bits (60), Expect = 2.2
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -2
Query: 263 RLYRLLYFEPVSVIFEFLKPRFVNFSEGTTIAAVFF 156
+L+ L++F PV+ I +FLKP + ++ FF
Sbjct: 575 QLHTLIFFNPVADIGKFLKPMLKKLKKLRVLSLCFF 610
>05_05_0089 -
22305727-22306115,22306206-22306311,22306386-22306730,
22306847-22307257
Length = 416
Score = 27.9 bits (59), Expect = 2.9
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 5 ELTRWRRSRTSGSPGCR 55
E T W +SRT G P CR
Sbjct: 184 EATIWAKSRTGGEPACR 200
>03_06_0589 + 34926560-34927198
Length = 212
Score = 27.5 bits (58), Expect = 3.8
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -2
Query: 278 SQRFVRLYRLLYFEPVSVIFEFLKPRFVNFSEGTTIAAVFFR 153
S R LYR + ++PV+V F F R F E T+ A + R
Sbjct: 80 SLRNPNLYRGISYDPVAVAFSFNGTR---FDESATVPAFYHR 118
>06_03_1104 +
27623632-27623795,27624052-27624175,27624316-27624832,
27624943-27625073,27625161-27625567,27625690-27625963,
27626195-27626814,27627424-27627859
Length = 890
Score = 26.6 bits (56), Expect = 6.7
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = -1
Query: 174 HCRRILSVAYLLVCISAGLLHRYENIPIF*FFLQNASCRILQPGDPLVLER 22
HC+R L V +VC + I + LQNASC+ L PG L + R
Sbjct: 547 HCKRNLDVG--IVCNDCRDHYSEGLIRV----LQNASCQNLSPGPKLYISR 591
>06_03_1085 +
27491735-27492754,27492854-27492978,27493088-27493232,
27493328-27493591
Length = 517
Score = 26.6 bits (56), Expect = 6.7
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +3
Query: 123 LQKYIPVDMLPKEYGG 170
L KYIP++ +P +YGG
Sbjct: 380 LLKYIPIEAIPVKYGG 395
>05_04_0043 +
17450999-17451181,17451353-17451416,17451642-17451700,
17452331-17452406,17452469-17452597,17453524-17453611,
17453711-17453966,17454308-17454423,17454569-17454789,
17454977-17455005,17455167-17455273,17455778-17456015
Length = 521
Score = 26.6 bits (56), Expect = 6.7
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 137 YVFLQAFYIGMKIYLFFNFSFKTPRAEFCS 48
Y Q ++GM IY F+N+ F + A+ +
Sbjct: 284 YQATQEGFVGMNIYSFWNYPFSSSSADIAA 313
>04_03_0975 -
21370715-21370877,21371227-21371319,21371383-21371466,
21371745-21371869,21372360-21372600,21373640-21373734
Length = 266
Score = 26.6 bits (56), Expect = 6.7
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -2
Query: 323 AFNSEQFIVVCWF--SWSQRFVRLYRLLYFEPVSVIFEFLKPRFVNFSEGT 177
A N + ++ W+ S S F RLY L +F P V+ ++ ++ S GT
Sbjct: 132 AANQLKVFLLIWYVTSLSSSFTRLYLLAFFAPGFVLLKY----YLRVSSGT 178
>04_04_1660 - 35140641-35141894
Length = 417
Score = 26.2 bits (55), Expect = 8.9
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 79 PSKRLVPNSAARGSTSSRAPPPREL 5
PS +P+S++ ST+S A PP+ L
Sbjct: 129 PSPPSLPSSSSSSSTASTAHPPKSL 153
>04_04_1589 -
34636563-34636856,34636982-34637159,34637349-34637461,
34637713-34638316,34638401-34638581,34638674-34638816,
34638972-34639141,34639221-34639307,34639414-34639639,
34639825-34639964
Length = 711
Score = 26.2 bits (55), Expect = 8.9
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -2
Query: 284 SWSQRFVRLYRLLYFEPVSVIFEF 213
+W R LYFEPVSV F +
Sbjct: 253 TWPGRLTLTTHALYFEPVSVDFSY 276
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,495,652
Number of Sequences: 37544
Number of extensions: 207065
Number of successful extensions: 536
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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