Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_A15
(384 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U21938-1|AAA64309.1| 278|Homo sapiens alpha-tocopherol transfer... 32 0.55
D49488-1|BAA08449.1| 278|Homo sapiens alpha-tocopherol transfer... 32 0.73
BC058000-1|AAH58000.1| 278|Homo sapiens tocopherol (alpha) tran... 32 0.73
AL512325-1|CAI20998.1| 3130|Homo sapiens REV3-like, catalytic su... 31 1.7
AL136310-2|CAI20509.1| 3130|Homo sapiens REV3-like, catalytic su... 31 1.7
AL080317-2|CAI19192.1| 3130|Homo sapiens REV3-like, catalytic su... 31 1.7
AL157766-1|CAI13922.2| 4432|Homo sapiens spastic ataxia of Charl... 29 6.8
AF193556-1|AAF31262.1| 3829|Homo sapiens sacsin protein. 29 6.8
>U21938-1|AAA64309.1| 278|Homo sapiens alpha-tocopherol transfer
protein protein.
Length = 278
Score = 32.3 bits (70), Expect = 0.55
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Frame = +3
Query: 81 KIKK*VYFHTD--VKGLQKYIPVDMLPKEYGGNGCTLTEVNKAW---LKKLEDYRHWFKV 245
KIK+ ++ H + + L ++ P D+LP EYGG ++ ++ + W + K EDY +
Sbjct: 217 KIKERIHMHGNNYKQSLLQHFP-DILPLEYGGEEFSMEDICQEWTNFIMKSEDYLR--SI 273
Query: 246 QESIK 260
ESI+
Sbjct: 274 SESIQ 278
>D49488-1|BAA08449.1| 278|Homo sapiens alpha-tocopherol transfer
protein protein.
Length = 278
Score = 31.9 bits (69), Expect = 0.73
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Frame = +3
Query: 81 KIKK*VYFHTD--VKGLQKYIPVDMLPKEYGGNGCTLTEVNKAW---LKKLEDYRHWFKV 245
KIK+ ++ H + + L ++ P D+LP EYGG ++ ++ + W + K EDY +
Sbjct: 217 KIKERIHMHGNNYKQSLLQHFP-DILPLEYGGEEFSMEDICQEWTNFIMKSEDYLS--SI 273
Query: 246 QESIK 260
ESI+
Sbjct: 274 SESIQ 278
>BC058000-1|AAH58000.1| 278|Homo sapiens tocopherol (alpha)
transfer protein protein.
Length = 278
Score = 31.9 bits (69), Expect = 0.73
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Frame = +3
Query: 81 KIKK*VYFHTD--VKGLQKYIPVDMLPKEYGGNGCTLTEVNKAW---LKKLEDYRHWFKV 245
KIK+ ++ H + + L ++ P D+LP EYGG ++ ++ + W + K EDY +
Sbjct: 217 KIKERIHMHGNNYKQSLLQHFP-DILPLEYGGEEFSMEDICQEWTNFIMKSEDYLS--SI 273
Query: 246 QESIK 260
ESI+
Sbjct: 274 SESIQ 278
>AL512325-1|CAI20998.1| 3130|Homo sapiens REV3-like, catalytic subunit
of DNA polymerase zeta (yeast) protein.
Length = 3130
Score = 30.7 bits (66), Expect = 1.7
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +1
Query: 154 RKNTAAMVVPSLKLTKRGLRN--SKITDTGSKYRSL*RRTNL*DQENQQTTMNCSELKAH 327
+K+ A + PS+ KR RN +K+ D G K ++TN + TT+ ++K+
Sbjct: 1175 KKSKAKLANPSIVTKKRNKRNQTNKLVDDGKKKPRAKQKTNEKGTSRKHTTLKDEKIKSQ 1234
Query: 328 S 330
S
Sbjct: 1235 S 1235
>AL136310-2|CAI20509.1| 3130|Homo sapiens REV3-like, catalytic subunit
of DNA polymerase zeta (yeast) protein.
Length = 3130
Score = 30.7 bits (66), Expect = 1.7
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +1
Query: 154 RKNTAAMVVPSLKLTKRGLRN--SKITDTGSKYRSL*RRTNL*DQENQQTTMNCSELKAH 327
+K+ A + PS+ KR RN +K+ D G K ++TN + TT+ ++K+
Sbjct: 1175 KKSKAKLANPSIVTKKRNKRNQTNKLVDDGKKKPRAKQKTNEKGTSRKHTTLKDEKIKSQ 1234
Query: 328 S 330
S
Sbjct: 1235 S 1235
>AL080317-2|CAI19192.1| 3130|Homo sapiens REV3-like, catalytic subunit
of DNA polymerase zeta (yeast) protein.
Length = 3130
Score = 30.7 bits (66), Expect = 1.7
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +1
Query: 154 RKNTAAMVVPSLKLTKRGLRN--SKITDTGSKYRSL*RRTNL*DQENQQTTMNCSELKAH 327
+K+ A + PS+ KR RN +K+ D G K ++TN + TT+ ++K+
Sbjct: 1175 KKSKAKLANPSIVTKKRNKRNQTNKLVDDGKKKPRAKQKTNEKGTSRKHTTLKDEKIKSQ 1234
Query: 328 S 330
S
Sbjct: 1235 S 1235
>AL157766-1|CAI13922.2| 4432|Homo sapiens spastic ataxia of
Charlevoix-Saguenay (sacsin) protein.
Length = 4432
Score = 28.7 bits (61), Expect = 6.8
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +3
Query: 147 MLPKEYGGNGCTLTEVN---KAWLKKLEDYRHWFKVQESIKADESLRPGKPT 293
+LP+EY CT + N ++WLK W + ES+ E KPT
Sbjct: 3074 VLPREYKTKSCTKWKDNFASESWLKNA-----WHFISESVSVKEDQEETKPT 3120
>AF193556-1|AAF31262.1| 3829|Homo sapiens sacsin protein.
Length = 3829
Score = 28.7 bits (61), Expect = 6.8
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +3
Query: 147 MLPKEYGGNGCTLTEVN---KAWLKKLEDYRHWFKVQESIKADESLRPGKPT 293
+LP+EY CT + N ++WLK W + ES+ E KPT
Sbjct: 2471 VLPREYKTKSCTKWKDNFASESWLKNA-----WHFISESVSVKEDQEETKPT 2517
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,873,776
Number of Sequences: 237096
Number of extensions: 1173712
Number of successful extensions: 2483
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2483
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2583773550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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