Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_A13
(331 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch... 99 2e-22
SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac... 97 8e-22
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte... 27 0.56
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 25 2.2
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 25 3.0
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 25 3.0
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 24 5.2
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc... 23 9.0
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 23 9.0
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|... 23 9.0
>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 1|||Manual
Length = 127
Score = 99.1 bits (236), Expect = 2e-22
Identities = 43/72 (59%), Positives = 56/72 (77%)
Frame = +1
Query: 94 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKSRHMLP 273
I+KKRTK F RHQSDR+ ++ +WRKPRGID+ VRRRF+G MP IGYG+NKK+R+ +P
Sbjct: 6 IIKKRTKPFKRHQSDRFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65
Query: 274 SGYRKVLVHNSS 309
+G + LV N S
Sbjct: 66 NGLKAFLVRNVS 77
>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 2|||Manual
Length = 127
Score = 96.7 bits (230), Expect = 8e-22
Identities = 43/72 (59%), Positives = 55/72 (76%)
Frame = +1
Query: 94 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKSRHMLP 273
IVKKRTK F RHQSD + ++ +WRKPRGID+ VRRRF+G MP IGYG+NKK+R+ +P
Sbjct: 6 IVKKRTKPFKRHQSDLFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65
Query: 274 SGYRKVLVHNSS 309
+G + LV N S
Sbjct: 66 NGLKAFLVRNVS 77
>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 27.5 bits (58), Expect = 0.56
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -2
Query: 216 LTLEAPTYSVVDTSRFTPVPLKFIITIRLVTNKSFRPLF 100
+T+ A Y V+ + +I+T L+TN +F+PL+
Sbjct: 48 MTIVASLYPVIGSEFKLMNNASYIVTAYLITNTAFQPLY 86
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.4 bits (53), Expect = 2.2
Identities = 21/68 (30%), Positives = 30/68 (44%)
Frame = +1
Query: 85 RPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKSRH 264
R T VK+R K I+ S+ + KP G R R+ K Y +P G + +
Sbjct: 540 RETKVKRRRKARIQETSEESTVVNEPNEKPDGRSRRERK--KVNYALP--GLRTKLRRNF 595
Query: 265 MLPSGYRK 288
LPS + K
Sbjct: 596 DLPSDHVK 603
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 25.0 bits (52), Expect = 3.0
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 118 FIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 243
F H D YD+L NW++ ++ +RFK NI G
Sbjct: 822 FCVHTRDVYDELVPNWKETYQMEITNVKRFKLIIYQRNIHTG 863
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 25.0 bits (52), Expect = 3.0
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = -2
Query: 135 RLVTNKSFRPLFDDCRSVNRSDS---HFKLFH*E 43
R++ ++++RPL DD + R S H KL H E
Sbjct: 385 RIINHENYRPLMDDIEILLRDQSFVGHPKLEHLE 418
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 24.2 bits (50), Expect = 5.2
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +1
Query: 133 SDRYDKLKRN-WRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKSRHMLPSGYRKVLVHN 303
+ R D++ N RK G+ + F L NIGYG+ K S + +K +H+
Sbjct: 504 NQRLDQITLNSLRKAIGVVPQDTPLFNDTILY-NIGYGNPKASNDEIVEAAKKAKIHD 560
>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 703
Score = 23.4 bits (48), Expect = 9.0
Identities = 7/18 (38%), Positives = 15/18 (83%)
Frame = +1
Query: 118 FIRHQSDRYDKLKRNWRK 171
FI+H+ D +DKL++ +++
Sbjct: 22 FIQHRLDLFDKLQKEYKE 39
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 23.4 bits (48), Expect = 9.0
Identities = 16/53 (30%), Positives = 16/53 (30%), Gaps = 2/53 (3%)
Frame = -1
Query: 274 WVACDGSSYLNHNQC--WASNIDP*SAYVLCCRYLXXXXXXXXXYHNDPTGDE 122
WV CDG H C A P S Y C N P DE
Sbjct: 35 WVQCDGCDCWQHASCVGLADKDIPESYY---CEVCHSRSDVSSQVQNSPNKDE 84
>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 554
Score = 23.4 bits (48), Expect = 9.0
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 62 KWLSDLFTDRQSSKRGRKDLF 124
KW L DR SKRG K+ F
Sbjct: 123 KWHLGLTPDRYPSKRGFKESF 143
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,382,488
Number of Sequences: 5004
Number of extensions: 25384
Number of successful extensions: 62
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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