Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_A13
(331 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 107 3e-24
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841 107 3e-24
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078... 107 3e-24
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848... 81 2e-16
04_04_0437 + 25193263-25194627 27 2.7
11_06_0496 - 24325587-24326143,24326658-24327495,24327612-24327764 27 4.7
04_01_0272 + 3624910-3625247,3625286-3625853,3625920-3626895,362... 27 4.7
12_02_0388 - 18486957-18487016,18487286-18489418,18489985-184904... 26 6.2
11_01_0277 + 2060328-2061061,2061360-2061420,2061560-2061679,206... 26 8.3
03_02_0738 - 10824121-10825572 26 8.3
02_05_1249 - 35240823-35242184 26 8.3
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 107 bits (256), Expect = 3e-24
Identities = 50/82 (60%), Positives = 64/82 (78%)
Frame = +1
Query: 64 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 243
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 244 SNKKSRHMLPSGYRKVLVHNSS 309
S+KK+RH LP+ ++K +VHN S
Sbjct: 60 SDKKTRHYLPNKFKKFVVHNVS 81
>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
Length = 133
Score = 107 bits (256), Expect = 3e-24
Identities = 50/82 (60%), Positives = 64/82 (78%)
Frame = +1
Query: 64 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 243
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 244 SNKKSRHMLPSGYRKVLVHNSS 309
S+KK+RH LP+ ++K +VHN S
Sbjct: 60 SDKKTRHYLPNKFKKFVVHNVS 81
>09_04_0630 +
19104678-19105463,19106169-19106348,19107775-19107864,
19108777-19108958,19109968-19109974,19111763-19111833,
19112188-19112224,19112433-19112603
Length = 507
Score = 107 bits (256), Expect = 3e-24
Identities = 49/84 (58%), Positives = 65/84 (77%)
Frame = +1
Query: 58 FKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIG 237
++M + P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIG
Sbjct: 321 YEMVV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIG 379
Query: 238 YGSNKKSRHMLPSGYRKVLVHNSS 309
YGS+KK+RH LP+ ++K +VHN S
Sbjct: 380 YGSDKKTRHYLPNKFKKFVVHNVS 403
>08_02_1315 +
26083856-26083945,26084093-26084226,26084753-26084819,
26085011-26085192,26085315-26085444
Length = 200
Score = 81.0 bits (191), Expect = 2e-16
Identities = 33/50 (66%), Positives = 44/50 (88%)
Frame = +1
Query: 160 NWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKSRHMLPSGYRKVLVHNSS 309
+WR+P+GID+RVRR+FKG LMPNIGYGS+KK+RH LP+ ++K +VHN S
Sbjct: 99 SWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVS 148
Score = 29.9 bits (64), Expect = 0.51
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +1
Query: 64 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 156
MA+ P+ IVKKR K+F R SDRY LK
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYLCLK 30
>04_04_0437 + 25193263-25194627
Length = 454
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 236 VMVQIRRAVTCYPAVIVKSWS 298
V+ + RR VTC P I+ SWS
Sbjct: 90 VIQKFRRTVTCDPQNIISSWS 110
>11_06_0496 - 24325587-24326143,24326658-24327495,24327612-24327764
Length = 515
Score = 26.6 bits (56), Expect = 4.7
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -1
Query: 277 RWVACDGSSYLNHNQC 230
RW+ CDG S+ H C
Sbjct: 209 RWIGCDGCSHWTHAGC 224
>04_01_0272 +
3624910-3625247,3625286-3625853,3625920-3626895,
3627053-3627087
Length = 638
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 225 HQILTLEAPTYSVVDTSRFTPVPLK 151
HQ++ AP Y+ VD + P+PL+
Sbjct: 74 HQLVPFWAPFYTSVDQTTSPPIPLR 98
>12_02_0388 -
18486957-18487016,18487286-18489418,18489985-18490484,
18490728-18490899
Length = 954
Score = 26.2 bits (55), Expect = 6.2
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +1
Query: 124 RHQSDRYDKLKRNWRKPRGIDN 189
R + D +++K W K RG+D+
Sbjct: 933 RFEDDELEEIKARWNKDRGLDS 954
>11_01_0277 +
2060328-2061061,2061360-2061420,2061560-2061679,
2061947-2062112,2062229-2062635
Length = 495
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = -1
Query: 331 HHQDLQFANCCGPRLYDNRWVACDGSSYLNHNQC 230
H + L + G ++ +RW+ DG YL C
Sbjct: 349 HVESLHYRGGGGVDVHVSRWIVLDGGYYLTARWC 382
>03_02_0738 - 10824121-10825572
Length = 483
Score = 25.8 bits (54), Expect = 8.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 136 DRYDKLKRNWRKPRGIDNR 192
DRY++++R WR P D+R
Sbjct: 369 DRYEEMRRQWRHPGLGDDR 387
>02_05_1249 - 35240823-35242184
Length = 453
Score = 25.8 bits (54), Expect = 8.3
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -1
Query: 271 VACDGSSYLNHNQCWASN 218
VACD SS+++ + WA+N
Sbjct: 166 VACDDSSFMHFVKTWAAN 183
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,991,154
Number of Sequences: 37544
Number of extensions: 162594
Number of successful extensions: 432
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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