Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_A13
         (331 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical pr...   100   2e-22
U39645-5|AAU05591.1|  345|Caenorhabditis elegans Hypothetical pr...    28   1.4  
U39645-4|AAU05592.1|  341|Caenorhabditis elegans Hypothetical pr...    28   1.4  
L16621-14|AAA28224.3|  612|Caenorhabditis elegans Glycosylation ...    27   2.4  
AF031833-1|AAC13669.1|  612|Caenorhabditis elegans GLY3 protein.       27   2.4  
Z81054-4|CAB02885.3|  321|Caenorhabditis elegans Hypothetical pr...    27   3.2  
L02877-1|AAA50614.1|  321|Caenorhabditis elegans homeoprotein pr...    27   3.2  
Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical p...    26   5.5  
AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical ...    26   5.5  
AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical ...    26   5.5  
AC024763-9|AAU20836.1|  404|Caenorhabditis elegans Hypothetical ...    26   5.5  
AC024763-8|AAK93863.1|  480|Caenorhabditis elegans Hypothetical ...    26   5.5  
U22831-13|AAM98013.1|  245|Caenorhabditis elegans G-protein-link...    26   7.3  
U22831-12|AAL65784.1|  614|Caenorhabditis elegans G-protein-link...    26   7.3  
U22831-11|AAL65783.1|  627|Caenorhabditis elegans G-protein-link...    26   7.3  
U22831-10|AAM98012.1|  667|Caenorhabditis elegans G-protein-link...    26   7.3  
AY053365-1|AAL15153.1|  627|Caenorhabditis elegans G-protein-lin...    26   7.3  
AY053364-1|AAL15152.1|  664|Caenorhabditis elegans G-protein-lin...    26   7.3  
AL132951-2|CAC44305.1|  561|Caenorhabditis elegans Hypothetical ...    26   7.3  
AF272738-1|AAK94896.1|  614|Caenorhabditis elegans G protein-lin...    26   7.3  
AL117206-10|CAB60452.2|  258|Caenorhabditis elegans Hypothetical...    25   9.7  

>Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical
           protein T24B8.1 protein.
          Length = 134

 Score =  100 bits (240), Expect = 2e-22
 Identities = 41/70 (58%), Positives = 58/70 (82%)
 Frame = +1

Query: 94  IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKSRHMLP 273
           +VKK+  +F RH+SDRY ++  +WRKP+GIDNRVRRRF+G   MP IG+GS++++R +LP
Sbjct: 11  VVKKKLTKFKRHESDRYRRVAPSWRKPKGIDNRVRRRFRGMRAMPTIGHGSDRRTRFVLP 70

Query: 274 SGYRKVLVHN 303
           +GY+KVLV N
Sbjct: 71  NGYKKVLVQN 80


>U39645-5|AAU05591.1|  345|Caenorhabditis elegans Hypothetical
           protein C14F11.4a protein.
          Length = 345

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = +1

Query: 82  YRPTIVKKRT--KRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKK 255
           Y P + KK    +RFI   ++R+D + RN   P     R  +  + Q L+ +  Y S+ +
Sbjct: 4   YPPLVTKKEIIYRRFIDDHNERFDNIVRN---PTSYPPRAPKPERPQNLVVSHNYHSDVE 60

Query: 256 SRHMLPSGYRKV 291
           + + L    +K+
Sbjct: 61  AEYQLSKINKKL 72


>U39645-4|AAU05592.1|  341|Caenorhabditis elegans Hypothetical
           protein C14F11.4b protein.
          Length = 341

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = +1

Query: 82  YRPTIVKKRT--KRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKK 255
           Y P + KK    +RFI   ++R+D + RN   P     R  +  + Q L+ +  Y S+ +
Sbjct: 4   YPPLVTKKEIIYRRFIDDHNERFDNIVRN---PTSYPPRAPKPERPQNLVVSHNYHSDVE 60

Query: 256 SRHMLPSGYRKV 291
           + + L    +K+
Sbjct: 61  AEYQLSKINKKL 72


>L16621-14|AAA28224.3|  612|Caenorhabditis elegans Glycosylation
           related protein 3 protein.
          Length = 612

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +1

Query: 232 IGYGSNKKSRHMLPSGYRKVLVHNSSRTGD 321
           +G+   K++ +  P G  KV+ HN++RT +
Sbjct: 396 VGHVFRKQTPYTFPGGTAKVIHHNAARTAE 425


>AF031833-1|AAC13669.1|  612|Caenorhabditis elegans GLY3 protein.
          Length = 612

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +1

Query: 232 IGYGSNKKSRHMLPSGYRKVLVHNSSRTGD 321
           +G+   K++ +  P G  KV+ HN++RT +
Sbjct: 396 VGHVFRKQTPYTFPGGTAKVIHHNAARTAE 425


>Z81054-4|CAB02885.3|  321|Caenorhabditis elegans Hypothetical
           protein F01D4.6a protein.
          Length = 321

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -1

Query: 328 HQDLQFANCCGPRLYDNRWVACDGSSYLNHNQC 230
           H++    NCC  ++YD      D  SY  H  C
Sbjct: 23  HENQNKCNCCNEQIYDRYIYRMDNRSY--HENC 53


>L02877-1|AAA50614.1|  321|Caenorhabditis elegans homeoprotein
           protein.
          Length = 321

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -1

Query: 328 HQDLQFANCCGPRLYDNRWVACDGSSYLNHNQC 230
           H++    NCC  ++YD      D  SY  H  C
Sbjct: 23  HENQNKCNCCNEQIYDRYIYRMDNRSY--HENC 53


>Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical
           protein C24F3.5 protein.
          Length = 1479

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +3

Query: 12  FGTRAWFTAAFLSEII*NGYQTCLQTDNRQKEDEKIYSSPVGSL 143
           F  R W    F  E I    +T    DN+ K D + + +P G +
Sbjct: 609 FEIRIWPNNRFTDEQIKGMMKTLTLGDNQMKNDARFFETPNGKI 652


>AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical
           protein C24F3.5 protein.
          Length = 1479

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +3

Query: 12  FGTRAWFTAAFLSEII*NGYQTCLQTDNRQKEDEKIYSSPVGSL 143
           F  R W    F  E I    +T    DN+ K D + + +P G +
Sbjct: 609 FEIRIWPNNRFTDEQIKGMMKTLTLGDNQMKNDARFFETPNGKI 652


>AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical
           protein C24F3.5 protein.
          Length = 1479

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +3

Query: 12  FGTRAWFTAAFLSEII*NGYQTCLQTDNRQKEDEKIYSSPVGSL 143
           F  R W    F  E I    +T    DN+ K D + + +P G +
Sbjct: 609 FEIRIWPNNRFTDEQIKGMMKTLTLGDNQMKNDARFFETPNGKI 652


>AC024763-9|AAU20836.1|  404|Caenorhabditis elegans Hypothetical
           protein Y39A3CL.7b protein.
          Length = 404

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 67  AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRR 201
           A RP  +P   K+R  RF+   S R+++     R P  + +R  R
Sbjct: 295 AERPA-KPNKEKERGDRFLPEPSRRFNRFNHRNRSPPSLSSRTSR 338


>AC024763-8|AAK93863.1|  480|Caenorhabditis elegans Hypothetical
           protein Y39A3CL.7a protein.
          Length = 480

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 67  AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRR 201
           A RP  +P   K+R  RF+   S R+++     R P  + +R  R
Sbjct: 371 AERPA-KPNKEKERGDRFLPEPSRRFNRFNHRNRSPPSLSSRTSR 414


>U22831-13|AAM98013.1|  245|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 2, isoform d protein.
          Length = 245

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 116 LFVLFLTIVGL*TGLIAILNYFTKKRGSEP 27
           LF+LFL+IV +   L  +L+Y+  K   +P
Sbjct: 10  LFMLFLSIVTVIGNLAVLLSYYLDKNIRQP 39


>U22831-12|AAL65784.1|  614|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 2, isoform b protein.
          Length = 614

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 116 LFVLFLTIVGL*TGLIAILNYFTKKRGSEP 27
           LF+LFL+IV +   L  +L+Y+  K   +P
Sbjct: 10  LFMLFLSIVTVIGNLAVLLSYYLDKNIRQP 39


>U22831-11|AAL65783.1|  627|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 2, isoform a protein.
          Length = 627

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 116 LFVLFLTIVGL*TGLIAILNYFTKKRGSEP 27
           LF+LFL+IV +   L  +L+Y+  K   +P
Sbjct: 10  LFMLFLSIVTVIGNLAVLLSYYLDKNIRQP 39


>U22831-10|AAM98012.1|  667|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 2, isoform c protein.
          Length = 667

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 116 LFVLFLTIVGL*TGLIAILNYFTKKRGSEP 27
           LF+LFL+IV +   L  +L+Y+  K   +P
Sbjct: 10  LFMLFLSIVTVIGNLAVLLSYYLDKNIRQP 39


>AY053365-1|AAL15153.1|  627|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor GAR-2b protein.
          Length = 627

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 116 LFVLFLTIVGL*TGLIAILNYFTKKRGSEP 27
           LF+LFL+IV +   L  +L+Y+  K   +P
Sbjct: 10  LFMLFLSIVTVIGNLAVLLSYYLDKNIRQP 39


>AY053364-1|AAL15152.1|  664|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor GAR-2a protein.
          Length = 664

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 116 LFVLFLTIVGL*TGLIAILNYFTKKRGSEP 27
           LF+LFL+IV +   L  +L+Y+  K   +P
Sbjct: 10  LFMLFLSIVTVIGNLAVLLSYYLDKNIRQP 39


>AL132951-2|CAC44305.1|  561|Caenorhabditis elegans Hypothetical
           protein Y67H2A.4a protein.
          Length = 561

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 160 NWRKPRGIDNRVRRRFKGQYLMPNIGYGSNK 252
           N +K + +  RV+RRFKG+ L   I +G  K
Sbjct: 421 NEKKQKHMLKRVKRRFKGENL-KGISFGETK 450


>AF272738-1|AAK94896.1|  614|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-2c protein.
          Length = 614

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 116 LFVLFLTIVGL*TGLIAILNYFTKKRGSEP 27
           LF+LFL+IV +   L  +L+Y+  K   +P
Sbjct: 10  LFMLFLSIVTVIGNLAVLLSYYLDKNIRQP 39


>AL117206-10|CAB60452.2|  258|Caenorhabditis elegans Hypothetical
           protein Y67A10A.2 protein.
          Length = 258

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/42 (26%), Positives = 14/42 (33%)
 Frame = -1

Query: 301 CGPRLYDNRWVACDGSSYLNHNQCWASNIDP*SAYVLCCRYL 176
           CGP   +N+   C    Y +    W    D       CC  L
Sbjct: 44  CGPLASNNKLSCCPAGGYWSKWSAWQKETDKIQVLHHCCAAL 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,667,818
Number of Sequences: 27780
Number of extensions: 143143
Number of successful extensions: 356
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)