Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_A12
         (488 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           21   5.3  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   9.3  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   9.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.3  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   9.3  

>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +2

Query: 167 LLSCGN*LETKPTTACHRSVCT 232
           L+ CG   +T+  T   R  CT
Sbjct: 115 LMCCGRGYKTQEVTVVERCACT 136


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 409 IVSGSRDKTIKLWNTLAE 462
           IVS +R+ TI++W  + +
Sbjct: 278 IVSPTRELTIQIWQQIVK 295


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 307 FCPRNRKERNF 275
           FCP+N KE  +
Sbjct: 337 FCPKNNKELKY 347


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/32 (25%), Positives = 19/32 (59%)
 Frame = -3

Query: 309 SFVPGTGKSVISITGQYNVRNEMGVTVQTLLW 214
           +F  G+ +++  +TG   + N++G   + +LW
Sbjct: 468 NFYNGSFRNLDQLTGLRLIGNDIGNLSRGMLW 499


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -3

Query: 135 RVFRISRNLSNPAIMATKRASEF*CFTHFYKSP 37
           R+F  S+N++       K    F  F  F K+P
Sbjct: 160 RIFTSSQNIAVIEYRIPKSGKGFSLFARFLKNP 192


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,583
Number of Sequences: 438
Number of extensions: 3221
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)