Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_A11
(322 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.07c |alp31||tubulin specific chaperone cofactor A |Schi... 36 0.002
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces... 28 0.40
SPBC337.10c |||anamorsin family protein|Schizosaccharomyces pomb... 27 0.70
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa... 26 1.2
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 25 2.1
SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces po... 25 2.1
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||... 25 2.8
SPCC737.04 |||S. pombe specific UPF0300 family protein 6|Schizos... 25 2.8
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 25 3.8
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 25 3.8
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 24 5.0
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar... 24 6.6
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 24 6.6
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 24 6.6
SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch... 23 8.7
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc... 23 8.7
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 23 8.7
SPBC1703.03c |||armadillo repeat protein, unknown biological rol... 23 8.7
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom... 23 8.7
>SPAC8E11.07c |alp31||tubulin specific chaperone cofactor A
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 119
Score = 35.9 bits (79), Expect = 0.002
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +1
Query: 118 EAEQQKNRIQKIKDEGQDEHNIRKQEEVLQESLMMVPDCQRRLAKAFTDLKNI 276
+ + + R+Q D G+D I Q+ VL++ L +PD RL A DL++I
Sbjct: 28 DINEAEKRVQSKIDNGEDSAEIEHQKFVLKKHLEALPDALVRLRNATNDLESI 80
Score = 24.2 bits (50), Expect = 5.0
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 48 IRQIKIKTGVVKRITKE 98
+R + IKT VVKRI K+
Sbjct: 5 VRSLVIKTNVVKRIIKD 21
>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 27.9 bits (59), Expect = 0.40
Identities = 18/65 (27%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Frame = +1
Query: 106 VYEKEAE-QQKNRIQKIK-DEGQDEHNIRKQEEVLQESLMMVPDCQRRLAKAFTDLKNIL 279
+ + EA+ QK+ ++ K D+G +E N +QE++L L + D + A+ + +++ L
Sbjct: 65 ISQMEADLSQKHATERQKLDKGDEETNETQQEDLLNTLLQQMEDTKITTAEK-SSVQSSL 123
Query: 280 ETEQN 294
T++N
Sbjct: 124 NTKEN 128
>SPBC337.10c |||anamorsin family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 288
Score = 27.1 bits (57), Expect = 0.70
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = +1
Query: 163 GQDEHNIRKQEEVLQES----LMMVPDCQRRLAKAFTDLKNILETEQNLKEHE 309
G D+ + ++E+L ES ++ VP+C+ K KN + ++EHE
Sbjct: 158 GDDDQELIDEDELLDESAHDNVLKVPECKPEPGKKKRACKNCTCGLREMEEHE 210
>SPCC4B3.12 |set9||histone lysine methyltransferase
Set9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 441
Score = 26.2 bits (55), Expect = 1.2
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -1
Query: 148 SVFYFSAVQPPFRKLSSSLVMRFTTPVFIFICRILGSAIVEMC 20
++ F + P R+LSS+ ++ FT + ++ L S E+C
Sbjct: 71 NILQFRELDPLLRRLSSTSLLAFTRHLKYYLSLYLPSCKFEIC 113
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 25.4 bits (53), Expect = 2.1
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +1
Query: 133 KNRIQKIKDEGQDEHNIRKQEEVLQESLMMVPDCQRRLAKAFTDL 267
K + I G DEH ++ Q E + + C R +K F DL
Sbjct: 55 KPDVSVISSTGTDEHGLKVQTVAQTEGVSPLQLCDRN-SKRFADL 98
>SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 414
Score = 25.4 bits (53), Expect = 2.1
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +1
Query: 163 GQDEHNIRKQEEVLQESLMMVPDCQRRLA 249
G H+ RK +++ + +PDC R +A
Sbjct: 139 GNQLHSFRKTRKLILRTFKGIPDCWRSIA 167
>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 25.0 bits (52), Expect = 2.8
Identities = 9/34 (26%), Positives = 23/34 (67%)
Frame = +1
Query: 109 YEKEAEQQKNRIQKIKDEGQDEHNIRKQEEVLQE 210
+++E+E+++ +K+K +E +++E+ LQE
Sbjct: 87 FQQESEREQKSARKVKRAELEEKLAKRREQELQE 120
>SPCC737.04 |||S. pombe specific UPF0300 family protein
6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 25.0 bits (52), Expect = 2.8
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 142 IQKIKDEGQDEHNIRKQEEVLQESLMMVPDCQRRLAK 252
++++ DEGQ+ +RK +Q+ P Q R A+
Sbjct: 12 LREVDDEGQENSFLRKTTRKIQQFFKSDPGYQSRKAE 48
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 24.6 bits (51), Expect = 3.8
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +1
Query: 133 KNRIQKIKDEGQDEHNIRKQEEVLQESLMMVPDCQRRLAKA 255
+ R++++ E Q+E ++ E +++SLM V D LA++
Sbjct: 830 QERMEQLAIERQEEQESEEEYEEVEQSLMDVVDEMSDLAES 870
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 24.6 bits (51), Expect = 3.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 250 KAFTDLKNILETEQNLKEHEDYI 318
K+FT + + TEQ L HE+YI
Sbjct: 342 KSFTPMYEDIITEQVLTAHENYI 364
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 24.2 bits (50), Expect = 5.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 145 QKIKDEGQDEHNIRKQEEVLQESLMMVPDCQRRLAKAF 258
QKI +E + E ++ EE+LQ+ V ++ L+ F
Sbjct: 500 QKINEEEETEVIAQEAEEILQDENAQVEIVKKSLSSEF 537
>SPAC27F1.04c |nuf2||spindle pole body protein
Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 23.8 bits (49), Expect = 6.6
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 112 EKEAEQQKNRIQKIKDEGQDEHNIRKQEEVL-QESLMMVPDCQRRLA 249
EK +Q +R QK++ Q NIR++ +V+ QE + + +++ A
Sbjct: 345 EKLEHEQHSRNQKLEAAKQRMDNIREEYKVITQERNKKIQETEKKNA 391
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 23.8 bits (49), Expect = 6.6
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Frame = +1
Query: 112 EKEAEQQKNRIQ-KIKDEGQDEHNIRKQEEV-------LQESLMMVPDCQRRLAKAFT-D 264
+K +Q+ R++ +I E Q +RKQ +V LQE+++ + + A T D
Sbjct: 1504 KKVMQQEVLRLRSRIAKELQKNELLRKQNQVLQDQVKALQETVVSSEEAESASVHADTKD 1563
Query: 265 LKNILETEQNL 297
L+N+ +TE+ L
Sbjct: 1564 LENLKKTEEML 1574
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 23.8 bits (49), Expect = 6.6
Identities = 13/65 (20%), Positives = 30/65 (46%)
Frame = +1
Query: 112 EKEAEQQKNRIQKIKDEGQDEHNIRKQEEVLQESLMMVPDCQRRLAKAFTDLKNILETEQ 291
+K+ ++ N ++IK++ + + + + LQ ++ +LK L+TE
Sbjct: 486 DKKDQELNNLREQIKEQKKVSESTQSSLQSLQRDILNEKKKHEVYESQLNELKGELQTEI 545
Query: 292 NLKEH 306
+ EH
Sbjct: 546 SNSEH 550
>SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 382
Score = 23.4 bits (48), Expect = 8.7
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = -2
Query: 63 FLFVEFWDLP 34
FLF++FW LP
Sbjct: 99 FLFIQFWPLP 108
>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 493
Score = 23.4 bits (48), Expect = 8.7
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 148 KIKDEGQDEHNIRKQEEVLQESLMMVPDCQR 240
K KDE QD+ + K + E L+ +C++
Sbjct: 225 KTKDESQDKDKLTKLDRAKLEWLIQGLNCEK 255
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 23.4 bits (48), Expect = 8.7
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +1
Query: 187 KQEEVLQESLMMVPDCQRRLAKAFTDLKNILETEQNL 297
++E+ L++ + PD + LAK + + LE + +L
Sbjct: 566 QEEQRLRQKSQITPDDEVELAKVYLNALETLENKPSL 602
>SPBC1703.03c |||armadillo repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 664
Score = 23.4 bits (48), Expect = 8.7
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +3
Query: 186 KAGGGTSRIADDGPRLPEEISESIHRSQEHIRNRTK 293
K G S++++ PRL + + R ++H+R R +
Sbjct: 610 KGSGYLSQLSEALPRLKNMVKKIDRRREKHLRFRAE 645
>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 420
Score = 23.4 bits (48), Expect = 8.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 109 YEKEAEQQKNRIQKIKDEGQDEH 177
+E+ EQ KNR+ +KD D++
Sbjct: 173 FEESTEQVKNRMIALKDVEADQY 195
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,083,120
Number of Sequences: 5004
Number of extensions: 16087
Number of successful extensions: 95
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -