Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_A11
(322 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1220 + 35021495-35021647,35022819-35022905,35022988-35023086 61 2e-10
06_03_0206 - 17898551-17900056,17900439-17900564,17902420-17902881 29 0.62
03_04_0161 + 17838466-17838551,17842379-17842445,17842537-178426... 29 0.81
02_04_0284 - 21581537-21581737,21581836-21581904,21581982-215820... 28 1.4
10_07_0063 - 12502305-12503361,12503567-12503668,12504251-125043... 28 1.9
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965... 27 2.5
02_02_0335 + 9063749-9064216,9064846-9064890,9065351-9065470,906... 27 2.5
09_02_0170 - 5273607-5273929,5274272-5274350,5274627-5274629 27 3.3
07_03_0434 + 18175560-18175695,18176068-18176177,18176553-181766... 27 3.3
11_06_0284 + 21909758-21913645 27 4.3
01_06_0554 + 30179641-30179658,30179725-30180126,30180580-301808... 27 4.3
11_01_0347 + 2601170-2602019,2602245-2603353 26 5.7
06_03_0671 + 23348958-23349101,23349475-23349834,23350003-233503... 26 7.6
04_03_0016 - 9420135-9420445,9420567-9420642,9420799-9420879 26 7.6
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 26 7.6
>02_05_1220 + 35021495-35021647,35022819-35022905,35022988-35023086
Length = 112
Score = 61.3 bits (142), Expect = 2e-10
Identities = 27/57 (47%), Positives = 39/57 (68%)
Frame = +1
Query: 109 YEKEAEQQKNRIQKIKDEGQDEHNIRKQEEVLQESLMMVPDCQRRLAKAFTDLKNIL 279
YEKE E++ + +K++G D +++++QE VL ES MMVPDC +RL A DLK L
Sbjct: 24 YEKEVEKEAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLETALADLKATL 80
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 48 IRQIKIKTGVVKRITKEEDSLRK 116
+R +KIKT KRI KE S K
Sbjct: 4 LRNLKIKTSTCKRIVKELRSYEK 26
>06_03_0206 - 17898551-17900056,17900439-17900564,17902420-17902881
Length = 697
Score = 29.5 bits (63), Expect = 0.62
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 115 KEAEQQKNRIQKIKDEGQDEHNIRKQEEVLQESLMM-VPDCQRRLAKAFTDLK 270
K+ E+ K ++ +++E +DE ++RK E L L + + + KA DL+
Sbjct: 294 KDQEKVKAALRSLQEEIEDERHLRKHSESLHRKLKKELSEMKSAFVKAVKDLE 346
>03_04_0161 +
17838466-17838551,17842379-17842445,17842537-17842662,
17842756-17842886,17843121-17843220,17843334-17843466,
17843500-17843544,17843545-17843608,17843692-17844469,
17844897-17845229,17845427-17845634,17845733-17845809,
17846168-17846240,17846343-17846413,17846597-17846716,
17846815-17846879,17846974-17847124
Length = 875
Score = 29.1 bits (62), Expect = 0.81
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +1
Query: 115 KEAEQQKNRIQKIKDEGQDEHNIRKQEEVLQESLMMVPDCQR 240
K+ E+++N I+DE D +N + ++ + E+ +M CQR
Sbjct: 71 KKQEEEENNTISIEDEMCDANNKKGKKMLTGENALMCHQCQR 112
>02_04_0284 -
21581537-21581737,21581836-21581904,21581982-21582052,
21582320-21582644
Length = 221
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = -1
Query: 130 AVQPPFRKLSSSLVMRFTTPVFIFICRILGSAIVEMCRFC 11
++ P + SSL+MR + F F+ +LG+ ++++ R C
Sbjct: 78 SIDPSYHMRFSSLIMRPSCNWFDFLSYLLGADVLQIDRVC 117
>10_07_0063 -
12502305-12503361,12503567-12503668,12504251-12504378,
12504653-12504764,12504876-12504927,12505260-12505517,
12505943-12506079,12506296-12506606
Length = 718
Score = 27.9 bits (59), Expect = 1.9
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +1
Query: 112 EKEAEQQKNRIQKIKDEGQDEHNIRKQEEVLQESLMMVPDCQRRLAKAFTDLKN 273
E E ++ NR ++ K +GQD N + + V + + Q+R K L++
Sbjct: 324 ENERMRRLNRNKENKSKGQDNMNKKSSQAVFPQHTVTTNTVQKRAEKIIPSLQH 377
>04_04_1630 - 34896021-34896143,34896329-34896403,34896500-34896556,
34897176-34897352,34897426-34897492,34898043-34898101,
34898188-34898241,34898455-34898604,34898709-34898918,
34898980-34899039,34899399-34899527,34899616-34899720,
34899935-34900024,34900630-34900695,34901047-34901115,
34901348-34901467,34901572-34901634,34901681-34901817,
34902070-34902160,34902298-34902463,34902700-34904172,
34905666-34905940,34906322-34906819,34906996-34907145,
34907840-34907911,34908006-34908266,34908478-34908558,
34908745-34908996,34909323-34909382,34909602-34909853,
34910385-34910549,34910589-34910849,34911267-34912307,
34913398-34913457,34914055-34914165,34914448-34914534,
34915227-34915300,34915397-34915490,34915644-34915689,
34916397-34916521
Length = 2501
Score = 27.5 bits (58), Expect = 2.5
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +1
Query: 190 QEEVLQESLMMVPDCQRRLAKAFTDLKNILETEQNLKEHED 312
+EE L + + +CQ L+K +L+ I E + L++ D
Sbjct: 1552 EEEALASAQEEIKECQESLSKCEEELRRIQEKKMELQKEVD 1592
>02_02_0335 +
9063749-9064216,9064846-9064890,9065351-9065470,
9066025-9067527
Length = 711
Score = 27.5 bits (58), Expect = 2.5
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +1
Query: 115 KEAEQQKNRIQKIKDEGQDEHNIRKQEEVLQESL-MMVPDCQRRLAKAFTDLKNILETEQ 291
K+ E+ I ++DE +DE +R+ E L + + + KA DL+ +T+
Sbjct: 310 KDKEKIAADIHSLQDELEDERRLRRHSEDLHRKFGKELSEIKSAFVKAVKDLEKEKKTKN 369
Query: 292 NLKEHEDYIA 321
L++ D A
Sbjct: 370 LLEDLCDQFA 379
>09_02_0170 - 5273607-5273929,5274272-5274350,5274627-5274629
Length = 134
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +1
Query: 112 EKEAEQQKNRIQKIKDEGQDEHNIRKQEEVLQESLMMVP 228
EKE +++K + +K K E +++ +K+EE ++ P
Sbjct: 80 EKEEKEKKEKEEKEKKEKEEKEKKKKEEEQNNPKIVCTP 118
>07_03_0434 +
18175560-18175695,18176068-18176177,18176553-18176616,
18176839-18176915,18177152-18177223,18178337-18178456
Length = 192
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 187 KQEEVLQESLMMVPDCQRRLAKAFTDL 267
KQ EV L+ V DCQRR ++D+
Sbjct: 163 KQFEVFDIELLAVQDCQRRTIAFYSDV 189
>11_06_0284 + 21909758-21913645
Length = 1295
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 6 RKQKRHISTMADPRIRQIKIKTGVVKRITKE 98
RK KRH+ AD + ++ + GVV+ ITK+
Sbjct: 402 RKLKRHME--ADEKTKEFNKQIGVVEEITKQ 430
>01_06_0554 +
30179641-30179658,30179725-30180126,30180580-30180892,
30180966-30181358,30181442-30182427
Length = 703
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/58 (22%), Positives = 28/58 (48%)
Frame = +1
Query: 109 YEKEAEQQKNRIQKIKDEGQDEHNIRKQEEVLQESLMMVPDCQRRLAKAFTDLKNILE 282
Y+K + D+ + HN++ + LQ+SL M D ++LA + +++ +
Sbjct: 581 YKKATSDDNIAFSMLHDKKKKLHNLQDEITGLQQSLEMKKDEMQKLAHQVAEHESVFQ 638
>11_01_0347 + 2601170-2602019,2602245-2603353
Length = 652
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/53 (24%), Positives = 29/53 (54%)
Frame = +1
Query: 160 EGQDEHNIRKQEEVLQESLMMVPDCQRRLAKAFTDLKNILETEQNLKEHEDYI 318
EG ++ ++ QE+V+Q+ LM ++K ++ + + NL + ED++
Sbjct: 549 EGVEDKLLKIQEQVIQDQLMGGKKVAVEVSKNVKEMSEEDKEKVNLGDSEDFL 601
>06_03_0671 +
23348958-23349101,23349475-23349834,23350003-23350302,
23350399-23350488,23353290-23353766
Length = 456
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 112 EKEAEQQKNRIQKIKDEGQDEHNIRKQE 195
EK +QQ+ + +K K +GQ E + R Q+
Sbjct: 383 EKTTKQQRKKKKKKKKDGQKEDDNRSQQ 410
>04_03_0016 - 9420135-9420445,9420567-9420642,9420799-9420879
Length = 155
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 184 RKQEEVLQESLMM-VPDCQRRLAKAFTDLKNILETEQNLKEHE 309
RKQ + ++ + + C+R++ KA D+K + E K+++
Sbjct: 23 RKQFQTVEMKVRIDCEGCERKIKKALEDMKGVSSVEVTAKQNK 65
>01_01_0128 -
1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 25.8 bits (54), Expect = 7.6
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 106 VYEKEAEQQKNRIQKIKDEGQDE 174
+ EKE E++K R+ +K +DE
Sbjct: 623 ILEKEKEEEKKRLSVLKKSAEDE 645
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,144,889
Number of Sequences: 37544
Number of extensions: 116177
Number of successful extensions: 478
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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