Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_A08
         (390 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       29   0.34 
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    26   1.8  
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    26   2.4  
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot...    26   2.4  
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    25   3.1  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    25   4.1  
SPBC19G7.13 |trf1||telomeric DNA binding factor Trf1|Schizosacch...    25   4.1  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    25   5.5  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    24   7.2  
SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc...    24   7.2  
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    24   9.5  
SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual    24   9.5  
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    24   9.5  

>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 28.7 bits (61), Expect = 0.34
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 119 PTAHHQPDRTATPQPQNTGRSR 184
           PT + QP RT   QPQ TG S+
Sbjct: 457 PTGYMQPQRTGMMQPQRTGFSQ 478


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +2

Query: 155 PQPQNTGRSRGNCHCKPGNCIFGPASRKHPNR*PTHHGPPSH 280
           P+P ++   R    C P    F P    HP+  P HH P  H
Sbjct: 149 PEPLSSNHVRS---CPP----FPPTQHHHPHTRPPHHPPHPH 183


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = -2

Query: 281 SDSADHDALVTGLDVSLKLARICSFPVCSGSSLGIDRCSEAVG*QFDQVGG 129
           +DS        G    L + R+ + P  +  + G+D+ ++A+   FD  GG
Sbjct: 195 NDSQRQATKAAGAIAGLNVLRVVNEPTAAALAYGLDKKNDAIVAVFDLGGG 245


>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
           Sin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +1

Query: 151 YPTASEHRSIPRELPLQTGKLHIRASFKETSKPVTNASWSAESLAGLQVEGLRLP 315
           YP  S+H   P  +P    K HIR +   +S+    A    ++L    V  +RLP
Sbjct: 395 YPFKSKH---PTSIPEANNKTHIRHTSSTSSQSQKQAQDVKDTLNTSHVVQVRLP 446


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -1

Query: 225 GPNMQFPGLQWQFPRDRPVF*GCGVAVRSGWWCA-VGSAELTRK*ILR 85
           G ++QF  + + +  +RP+  GC   + +G   A VG++   +  ILR
Sbjct: 440 GGSIQFDNVHFSYNPNRPILNGCSFNIPAGAKVAFVGASGCGKSTILR 487


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 81  YTLVSTCVLVLRYQPHTTNLIELLPHSLRTPVDPEGTATANRETAY 218
           Y  V T    +  + + TNL +++  SL TPV  +    AN  +A+
Sbjct: 214 YDSVMTFYAQIYPKQNMTNLEDIMSLSLLTPVSSKTDENANSSSAF 259


>SPBC19G7.13 |trf1||telomeric DNA binding factor
           Trf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 95  YLRVSSALPTAHHQPDRTATPQ 160
           YLR++  +  A +QP+  ATPQ
Sbjct: 73  YLRMNQGMDYAFNQPNPIATPQ 94


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 141 IELLPHSLRTPVDPEGTATANRETA 215
           IE+LP S +TP   + T+T+   T+
Sbjct: 863 IEVLPESQKTPTAVDNTSTSRGSTS 887


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 44  PWFLKNHRHSSGLHLSIYLRVSSALPTAHHQP 139
           P FLK+   +S    ++  R +S  PT  H+P
Sbjct: 30  PAFLKSGNTASSSSPTLQFRPTSRYPTLSHEP 61


>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 171 PVDPEGTATANRETAYSGQLQGN 239
           PV+ + TA  N+E A   +L+GN
Sbjct: 69  PVEEDSTAHVNKEEAEKLKLEGN 91


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +2

Query: 2   HEVTLSAIRVAPPRPWFLKNHRHSSGLHL 88
           H++  S   + P RP F +      G HL
Sbjct: 389 HDIERSLFTIVPSRPHFPRGFYWDEGFHL 417


>SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 175 TGVLRLWGSSSIRLVVCGW 119
           T + + W S+S+  V CGW
Sbjct: 9   TSISKNWWSASLVPVACGW 27


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -1

Query: 222 PNMQFPGLQWQFPRDRPVF*G 160
           P   F G  WQFP D  +  G
Sbjct: 770 PENAFQGWTWQFPNDLSIMNG 790


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,708,156
Number of Sequences: 5004
Number of extensions: 35560
Number of successful extensions: 108
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)