Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_A08
(390 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0135 - 15118082-15118300,15118388-15118546,15118783-151188... 33 0.061
12_02_1169 - 26655170-26655332,26655429-26655504,26655603-266557... 33 0.080
03_05_0530 - 25306788-25306919,25307446-25308037,25308152-253089... 32 0.14
10_08_0424 - 17803984-17805270 32 0.19
02_05_0177 + 26505956-26506202,26506838-26507247,26507448-265076... 32 0.19
11_03_0066 + 9529969-9530166,9530271-9530450,9530559-9531287,953... 31 0.32
11_08_0081 - 28216179-28216381,28216590-28216657,28217131-282172... 30 0.57
07_03_0562 + 19535801-19535865,19535972-19536017,19536125-195362... 29 0.99
05_03_0074 + 8095355-8096575,8096664-8096901,8096990-8097667,809... 29 1.7
04_04_0455 - 25354071-25354128,25354129-25354307 28 2.3
03_01_0645 - 4731037-4731543,4731706-4731933 28 3.0
08_01_0537 + 4666488-4666870,4667706-4667850,4668299-4668392,466... 27 4.0
07_03_0394 - 17633753-17636788 27 4.0
07_02_0031 - 12035450-12035709,12036186-12036699 27 4.0
06_01_0245 - 1849156-1849197,1849300-1849341,1849564-1849605,184... 27 7.0
01_06_1620 + 38697960-38698131,38698532-38700732 27 7.0
08_01_0922 + 9092266-9093174 26 9.2
05_04_0435 - 21198234-21198379,21199012-21199030,21199093-211993... 26 9.2
03_02_0882 - 12121917-12124446,12124739-12124919,12125057-121251... 26 9.2
03_02_0731 - 10786122-10787018,10787859-10788449,10788659-107887... 26 9.2
>10_08_0135 -
15118082-15118300,15118388-15118546,15118783-15118849,
15118969-15119141,15119602-15119698,15119782-15119900,
15120000-15120140,15120214-15120298,15120411-15120612,
15120906-15120970,15121365-15121654
Length = 538
Score = 33.5 bits (73), Expect = 0.061
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +3
Query: 63 IGTLLAYTLVSTCVLVLRYQPHTTNLIEL-LPHSLRTPVDPEGTATANRETAYSGQLQGN 239
+GTLLA+T+V+ VL++RY P ++ LP S + G + + E + GN
Sbjct: 469 VGTLLAFTMVAISVLIVRYAPPNEIATKVALPGSSESLTSDSGYSEPDEENSEDLLGNGN 528
Query: 240 IQTGN 254
T +
Sbjct: 529 ENTSD 533
>12_02_1169 -
26655170-26655332,26655429-26655504,26655603-26655715,
26655808-26655913,26656001-26656235,26656415-26656573,
26657279-26657377,26657472-26657568,26657650-26657768,
26657860-26658000,26658100-26658184,26658287-26658488,
26659274-26659379
Length = 566
Score = 33.1 bits (72), Expect = 0.080
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = +3
Query: 63 IGTLLAYTLVSTCVLVLRYQP 125
+GTLLA+T+V+ +L+LRY P
Sbjct: 339 VGTLLAFTIVAVSILILRYAP 359
>03_05_0530 -
25306788-25306919,25307446-25308037,25308152-25308975,
25309533-25309592,25310115-25310180,25310318-25310461,
25310616-25310756,25310898-25311056,25311818-25311884,
25311986-25312158,25312237-25312333,25312410-25312528,
25312867-25312951,25313120-25313321,25314456-25314633
Length = 1012
Score = 32.3 bits (70), Expect = 0.14
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = +3
Query: 63 IGTLLAYTLVSTCVLVLRYQP 125
+GTLLA+T+V+ +L+LRY P
Sbjct: 363 VGTLLAFTIVAVSILILRYIP 383
>10_08_0424 - 17803984-17805270
Length = 428
Score = 31.9 bits (69), Expect = 0.19
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +2
Query: 53 LKNHRHSSGLHLSIYLRVSSALPTAHHQPDRTATPQPQNTGRS 181
L+ HRH L + LR SALP H P +TP + RS
Sbjct: 5 LRRHRHPHPLPAAHLLRRFSALPDVDHPPPPASTPTTPASTRS 47
>02_05_0177 +
26505956-26506202,26506838-26507247,26507448-26507624,
26507775-26507999,26508089-26508265,26508357-26508593,
26508855-26508944,26509102-26509254
Length = 571
Score = 31.9 bits (69), Expect = 0.19
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 63 IGTLLAYTLVSTCVLVLRYQPHTTN 137
+GTL Y++VS CV+ LR+ TT+
Sbjct: 409 VGTLTGYSVVSACVITLRWNDKTTS 433
>11_03_0066 +
9529969-9530166,9530271-9530450,9530559-9531287,
9531554-9531706,9531803-9532238,9532322-9532501,
9532643-9532889,9533090-9533123,9533385-9533489,
9533833-9533967,9534220-9534399,9534504-9534626
Length = 899
Score = 31.1 bits (67), Expect = 0.32
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +2
Query: 188 NCHCKPGNCIFGPASRKHPNR*PTHHGPPSHSQVYKWRVCGCRSRMILQRYLDCITSDPL 367
N C+P + S P R H V+K+R+ G RSR +++ +DC+ D +
Sbjct: 168 NTRCQPNAILEMVGSLNKPQRDRLH--ALGFDWVFKFRMNGLRSRELIEYLIDCLDPDSM 225
>11_08_0081 -
28216179-28216381,28216590-28216657,28217131-28217298,
28217370-28217436,28217509-28217576,28218256-28218420,
28218490-28218556,28218629-28218696,28219855-28219992,
28220189-28220353,28221227-28221304,28221380-28221532,
28222753-28222823,28223077-28223203,28223306-28223565,
28223679-28223842,28224287-28224450,28225873-28226159
Length = 826
Score = 30.3 bits (65), Expect = 0.57
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 26 RVAPPRPWFLKNHRHSSGLHLSIYLRVSSALPTAHHQPDRTATPQ 160
R +PP +++ S LHL + R S P Q D+ A+PQ
Sbjct: 554 RPSPPGQSHSRSYSRSHSLHLHDHARTRSCSPAPGRQDDQYASPQ 598
>07_03_0562 +
19535801-19535865,19535972-19536017,19536125-19536223,
19536588-19536674,19537545-19537613,19537702-19538710,
19539217-19539365,19539453-19540487,19540488-19541003
Length = 1024
Score = 29.5 bits (63), Expect = 0.99
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +2
Query: 71 SSGLHLSIYLRVSSALPTAHHQPDRTATPQPQNTGRSRGNCHCKPGNCIFGPASRKHP 244
+SG+H L +S P Q A PQP+N + H +PG+ +G + P
Sbjct: 755 ASGVHDMPSLNNTSGQPKPFFQSQEAAVPQPRN--ENTWVYHGRPGDGKYGTTDKSRP 810
>05_03_0074 +
8095355-8096575,8096664-8096901,8096990-8097667,
8097787-8097974
Length = 774
Score = 28.7 bits (61), Expect = 1.7
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 265 MMRWLPVWMFP*SWPEYAVSRFA 197
M R+LP W F W EY+V R A
Sbjct: 149 MRRFLPKWFFEFKWLEYSVHRDA 171
>04_04_0455 - 25354071-25354128,25354129-25354307
Length = 78
Score = 28.3 bits (60), Expect = 2.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 20 AIRVAPPRPWFLKNHRHSSGLHL 88
AI + PP P LKNH H +HL
Sbjct: 12 AIALHPPPPAALKNHVHVQAIHL 34
>03_01_0645 - 4731037-4731543,4731706-4731933
Length = 244
Score = 27.9 bits (59), Expect = 3.0
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1
Query: 181 PRELPLQTGKLHIRASFKETSKPVTNASWSAESLA 285
PR +P+Q K H ++ + T+KP A+ +AE LA
Sbjct: 143 PRRVPIQEAKKHRSSAVETTTKPA--AAVAAEKLA 175
>08_01_0537 +
4666488-4666870,4667706-4667850,4668299-4668392,
4668518-4668798
Length = 300
Score = 27.5 bits (58), Expect = 4.0
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 117 YQPHTTNLIELLPHSLRTPVDPEGTATANRETAYSGQ 227
Y+ H +L+ P + V PE A A+ E + SG+
Sbjct: 202 YKTHQQSLVYTFPEGTASVVSPEKLADASSENSSSGE 238
>07_03_0394 - 17633753-17636788
Length = 1011
Score = 27.5 bits (58), Expect = 4.0
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 145 NCYPTA-SEHRSIPRELPLQTGKLHIRASFKETSKPVTN 258
NC+ +A S H S P + GK+ IR S ET + T+
Sbjct: 669 NCHISADSNHSSSPGHMDKPIGKVRIRLSTLETGRVYTH 707
>07_02_0031 - 12035450-12035709,12036186-12036699
Length = 257
Score = 27.5 bits (58), Expect = 4.0
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = -3
Query: 331 ENHPGAAAADPPLVN-LRVTRRTMMRWLPVWMFP*SWPEYAVSRFAVAVPSGSTGVLRLW 155
EN GA P N T R M +W+ + +FP W + P S GV W
Sbjct: 137 ENISGAPICKKPRTNDHNPTLRLMHKWIAMTLFPIGWEPTGDAPGWTQAPRHSIGV-SSW 195
Query: 154 GSSS 143
S++
Sbjct: 196 ASAN 199
>06_01_0245 -
1849156-1849197,1849300-1849341,1849564-1849605,
1849697-1849824,1850078-1850285,1850381-1850561,
1851761-1852114,1852577-1852803
Length = 407
Score = 26.6 bits (56), Expect = 7.0
Identities = 21/66 (31%), Positives = 28/66 (42%)
Frame = +2
Query: 50 FLKNHRHSSGLHLSIYLRVSSALPTAHHQPDRTATPQPQNTGRSRGNCHCKPGNCIFGPA 229
F N + S GL +L + A+ + Q D T + GNC+ C FG
Sbjct: 281 FTANTKGSKGLDRD-HLFFAEAM-SLEGQKDYVVTCCSLISSNDNGNCY----TCKFGNR 334
Query: 230 SRKHPN 247
S KHPN
Sbjct: 335 SMKHPN 340
>01_06_1620 + 38697960-38698131,38698532-38700732
Length = 790
Score = 26.6 bits (56), Expect = 7.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 187 PSGSTGVLRLWGSSSIRLVVCGW*RRTNTQV 95
PSG+T + LW SSS+ W T T V
Sbjct: 201 PSGATQYILLWNSSSVYWASGNWTGNTYTGV 231
>08_01_0922 + 9092266-9093174
Length = 302
Score = 26.2 bits (55), Expect = 9.2
Identities = 16/63 (25%), Positives = 26/63 (41%)
Frame = +1
Query: 154 PTASEHRSIPRELPLQTGKLHIRASFKETSKPVTNASWSAESLAGLQVEGLRLPLPDDSP 333
P AS H +P + + + + SW+A + AG V+G P+DS
Sbjct: 48 PLASRHDRVPLAVAMAAASSGVYDHLFAPDDDAAS-SWAAAAAAGAAVQGQGQGSPNDSS 106
Query: 334 TLF 342
+ F
Sbjct: 107 SSF 109
>05_04_0435 -
21198234-21198379,21199012-21199030,21199093-21199302,
21199393-21199522,21199625-21199795,21199931-21200053,
21200185-21200289,21200412-21201124
Length = 538
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 322 PGAAAADPPLVNLRVTRRTMMRWLPVWM 239
P AAA PP++ ++RRT + L +W+
Sbjct: 4 PPAAARAPPVLRNELSRRTAVLGLRLWV 31
>03_02_0882 -
12121917-12124446,12124739-12124919,12125057-12125134,
12125731-12125764,12125864-12125975,12126053-12126238,
12126505-12126575
Length = 1063
Score = 26.2 bits (55), Expect = 9.2
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +1
Query: 154 PTASEHRSIPRELPLQ-TGKLHIRASF-KETSKPVTNASWSAESL 282
P + S P LP + T K R S K + PVT +SWS SL
Sbjct: 624 PQRARRNSSPPVLPKELTPKAPARKSSPKPSPAPVTRSSWSGGSL 668
>03_02_0731 -
10786122-10787018,10787859-10788449,10788659-10788740,
10789914-10790107
Length = 587
Score = 26.2 bits (55), Expect = 9.2
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +2
Query: 227 ASRKHPNR*PTHHGPPSHSQVYKWRVCGCRSRMILQRYLDCITS 358
A+ HP R HGP ++ +R C + + +R+L C S
Sbjct: 29 AALAHPARASVVHGPVRYTWADTYRRCRRLASALERRFLPCYVS 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,634,704
Number of Sequences: 37544
Number of extensions: 294307
Number of successful extensions: 883
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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