Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_A08
         (390 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    30   0.008
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    24   0.54 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   1.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   1.2  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   2.9  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   3.8  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 30.3 bits (65), Expect = 0.008
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +2

Query: 59  NHRHSSGLHLSIYLRVSSALPTAHHQPDRTATPQPQNTGRSRGNCHC 199
           +H+HS+ L  S Y        T HH P    TP PQ     +  C C
Sbjct: 441 HHQHSTPLAHSSYPAAIQIGHTPHHHPHPPETPGPQVETILQNACFC 487


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 24.2 bits (50), Expect = 0.54
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 185 GNCHCKPG 208
           G CHCKPG
Sbjct: 245 GGCHCKPG 252



 Score = 21.8 bits (44), Expect = 2.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 262 SWSAESLAGLQVEGLRLPLPDDSP 333
           +WS + +     +G RLP P D P
Sbjct: 841 NWSNQDVIKSIEKGYRLPAPMDCP 864


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 84  TLVSTCVLVLRYQPHTTNLIELLPHSL 164
           TLV +C +     PH T +  ++  SL
Sbjct: 127 TLVLSCAMKFESYPHDTQICSMMIESL 153


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 246 FGCFLEAGPNMQFPGLQWQFPRD 178
           F  FL   PN+ +     QFPRD
Sbjct: 316 FDEFLPPPPNLDYHDYSRQFPRD 338


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 179 SRGNCHCKPGNCIFG 223
           S GN +CK  +C+ G
Sbjct: 100 SSGNVYCKCDDCLLG 114


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 275 SHSQVYKWRVCGC 313
           SHS VY++R   C
Sbjct: 38  SHSNVYQYRCANC 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,330
Number of Sequences: 438
Number of extensions: 2839
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)