Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_A07
(326 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer... 26 1.7
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 24 5.1
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 24 6.7
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 24 6.7
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 24 6.7
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 24 6.7
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce... 24 6.7
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 23 8.8
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 23 8.8
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 23 8.8
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 23 8.8
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe... 23 8.8
>SPAC890.07c |rmt1|prmt1|type I protein arginine
N-methyltransferase Rmt1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 25.8 bits (54), Expect = 1.7
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +1
Query: 52 NTKKEADSGLKIKD 93
NTKK ADSGL KD
Sbjct: 4 NTKKSADSGLTAKD 17
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 24.2 bits (50), Expect = 5.1
Identities = 15/27 (55%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -2
Query: 310 TSKLVKS-GLRKESFSRASPHGRSFMN 233
TSK S LRKE SRA G SF N
Sbjct: 404 TSKCTVSLNLRKELLSRAYIQGSSFQN 430
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 23.8 bits (49), Expect = 6.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -2
Query: 313 NTSKLVKSGLRKESFSRASPHGRSFMNRSAPSTRSPN 203
N L K G +SF S SF++R +PS+ N
Sbjct: 995 NVWGLNKDGKADKSFIYGSLQNNSFLSRVSPSSLEEN 1031
>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 23.8 bits (49), Expect = 6.7
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -2
Query: 307 SKLVKSGLRKESFSRASPHGRSFMNRSAPSTRSPNF*DISLLTIDTKPSN 158
SKL K G +K+ + + + +NR PS +S L +K S+
Sbjct: 38 SKLTKLGKQKQRQKQKNTKKDTLVNRETPSKKSQKLETSDALKSKSKDSS 87
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 23.8 bits (49), Expect = 6.7
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 21 VNSFKEGDLNEHKEGSRFWIKDKGPIIETYQGFIETYRD 137
+ SF+E +N H + +KD I+ QGF T+ D
Sbjct: 481 ITSFRENMINVHLSNIQCDLKDVNYYIKRKQGF-PTFTD 518
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 23.8 bits (49), Expect = 6.7
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = +2
Query: 152 RRIRRLRVYGQQGDVLKVRGSCRWCGTVHK 241
RR RR + ++ G RWC +HK
Sbjct: 499 RRCRRTKYCSKECQHQAWPGHSRWCRVIHK 528
>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 715
Score = 23.8 bits (49), Expect = 6.7
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = +3
Query: 12 KHYVNSFKEGDLNEHKEGSRFW--IKDKGPIIETYQG 116
K+Y + FK+ ++ E +W +KD +E G
Sbjct: 364 KNYFSKFKDSEITEDIVEKEYWKLVKDNNTSLEVEYG 400
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 23.4 bits (48), Expect = 8.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 283 RKESFSRASPHGRSFMNRSAPSTRS 209
+KE+F R R F N +PS RS
Sbjct: 39 QKEAFYRGRSSTRQFNNTRSPSGRS 63
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 23.4 bits (48), Expect = 8.8
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 152 RRIRRLRVYGQQGDVLKVR 208
RRIR++ V+G G L+ R
Sbjct: 323 RRIRKMNVFGSAGAALRER 341
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 23.4 bits (48), Expect = 8.8
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +3
Query: 69 RFWIKDKGPIIETYQGFIETYRDPSGQRGEF 161
RFW +D P++ Y G ++ D G F
Sbjct: 227 RFWGEDGAPVVIDYVGCYDSDFDQYGDTEAF 257
>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 492
Score = 23.4 bits (48), Expect = 8.8
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 174 SMVNKEMS*KFGDLVDGAERFIKLLPWGEALEKDSFLRPDFTSL 305
SM+ M +L D ERF KL W ++ + + L + T L
Sbjct: 346 SMIRLSMPYILCELADHPERFYKLKDWSKSPDFNLALESNRTLL 389
>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 23.4 bits (48), Expect = 8.8
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Frame = -1
Query: 242 FYEPFRTIDKIPELLRHL------LVDHRHEAFEFAALSARIAVRLNKTLVSFNNRSF 87
F +P +T+D PE ++HL +V + + +SA A+ + K S N++F
Sbjct: 124 FSKP-KTVDNYPEYIQHLPGFTKKVVQNSNPEILVLCISALRAIDVLKPTKSLQNKNF 180
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,287,829
Number of Sequences: 5004
Number of extensions: 25348
Number of successful extensions: 70
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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