Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_A07
         (326 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0207 - 17927753-17927983,17928077-17928178,17928273-179285...    27   3.5  
03_06_0686 + 35553179-35553553,35554028-35554399,35554486-35554965     27   3.5  
11_01_0441 - 3363069-3363137,3363273-3363430,3363549-3363613,336...    27   4.6  
02_05_0883 - 32481502-32483085                                         26   8.0  
02_04_0366 - 22389591-22390527,22391296-22391429,22391762-223918...    26   8.0  
01_03_0012 + 11638363-11638476,11638854-11640678,11641855-116420...    26   8.0  

>06_03_0207 -
           17927753-17927983,17928077-17928178,17928273-17928502,
           17929257-17929343,17931263-17931389,17931485-17931628,
           17931920-17931985,17932136-17932254,17932437-17932551,
           17932626-17932732,17932969-17932983,17933810-17933900,
           17934528-17934671,17934750-17934980,17935093-17935248,
           17935330-17935483,17935973-17936117,17936241-17936355
          Length = 792

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
 Frame = -1

Query: 209 PELLRHLLVDHRHEA----FEFAALSARIAVRLNKTLVSFNNR--SFIFNPESASF 60
           PE+ R+ L+ +R E     F +A L A++   L   L +F NR  SF+  P  A +
Sbjct: 373 PEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNFINRVLSFVAKPAGAGY 428


>03_06_0686 + 35553179-35553553,35554028-35554399,35554486-35554965
          Length = 408

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 242 FYEPFRTIDKIPELLRHLLV 183
           F + FR  D  PELLRH+LV
Sbjct: 165 FLQGFRVGDGTPELLRHVLV 184


>11_01_0441 -
           3363069-3363137,3363273-3363430,3363549-3363613,
           3363709-3363777,3363881-3363973,3364081-3364184,
           3364327-3364410,3364486-3364693,3364809-3364880,
           3365005-3365080,3365788-3365900,3366006-3366153,
           3366996-3367073,3367968-3368097,3368296-3368486,
           3368644-3368704,3368847-3368956,3369090-3369312
          Length = 683

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 203 VRGSCRWCGTVHKTPAVGRSPREGLLP 283
           VR     CG V   P  GR  ++GLLP
Sbjct: 354 VRMPAALCGVVGLKPTAGRFSKDGLLP 380


>02_05_0883 - 32481502-32483085
          Length = 527

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -2

Query: 229 SAPSTRSPNF*DISLLTIDTKPSNSPRCPLGSR 131
           S+P+   PN  D++LLT+ +  ++SP  PL  R
Sbjct: 92  SSPAAPVPN--DVTLLTVLSACADSPSSPLARR 122


>02_04_0366 -
           22389591-22390527,22391296-22391429,22391762-22391816,
           22392364-22393225,22393342-22393459,22393647-22393737,
           22394627-22394670
          Length = 746

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -2

Query: 307 SKLVKSGLRKESFSRASPHGRSFMNRSAPSTRSPNF*DISLLTIDT 170
           S  + + +R  S +  + H RS    +  S RS     +SLLT+DT
Sbjct: 151 SATIAATVRSRSRTHRTTHLRSSSRGAGISLRSAAMQGVSLLTVDT 196


>01_03_0012 +
           11638363-11638476,11638854-11640678,11641855-11642096,
           11642198-11642327,11642464-11642774
          Length = 873

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 175 DTKPSNSPRCPLGSRYVSIKPW*VSIIGPLSLIQNL 68
           D KP+     PL  ++V   P  VSII PL++++ +
Sbjct: 650 DNKPNQHVAPPLTKKFVKTPPTIVSII-PLNILEKI 684


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,344,937
Number of Sequences: 37544
Number of extensions: 166708
Number of successful extensions: 558
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)