Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_A07
(326 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81494-14|CAJ43905.2| 745|Caenorhabditis elegans Hypothetical p... 144 2e-35
Z81494-8|CAB54212.3| 707|Caenorhabditis elegans Hypothetical pr... 144 2e-35
Z81057-7|CAJ43903.2| 745|Caenorhabditis elegans Hypothetical pr... 144 2e-35
Z92837-6|CAD21654.1| 483|Caenorhabditis elegans Hypothetical pr... 30 0.45
Z92837-5|CAB07403.1| 528|Caenorhabditis elegans Hypothetical pr... 30 0.45
U88171-1|AAB42251.2| 630|Caenorhabditis elegans Hypothetical pr... 30 0.45
AL031621-9|CAC70087.1| 483|Caenorhabditis elegans Hypothetical ... 30 0.45
AL031621-8|CAA20936.1| 528|Caenorhabditis elegans Hypothetical ... 30 0.45
AF072381-1|AAC62468.1| 483|Caenorhabditis elegans Akt/PKB serin... 30 0.45
Z92837-4|CAH10846.1| 193|Caenorhabditis elegans Hypothetical pr... 27 2.4
AL132863-7|CAJ80822.1| 231|Caenorhabditis elegans Hypothetical ... 26 5.6
AC024758-2|AAK73905.2| 208|Caenorhabditis elegans Hypothetical ... 26 5.6
U28738-12|AAK68400.1| 189|Caenorhabditis elegans Sr protein (sp... 26 7.4
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 26 7.4
Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical pr... 25 9.7
AF067949-8|AAX88812.1| 565|Caenorhabditis elegans Peroxisomal m... 25 9.7
AF067949-7|AAO25995.2| 626|Caenorhabditis elegans Peroxisomal m... 25 9.7
AF067949-6|AAC19238.1| 598|Caenorhabditis elegans Peroxisomal m... 25 9.7
>Z81494-14|CAJ43905.2| 745|Caenorhabditis elegans Hypothetical
protein F02E9.9b protein.
Length = 745
Score = 144 bits (348), Expect = 2e-35
Identities = 64/102 (62%), Positives = 78/102 (76%)
Frame = +3
Query: 9 LKHYVNSFKEGDLNEHKEGSRFWIKDKGPIIETYQGFIETYRDPSGQRGEFEGFVSMVNK 188
L+ YV FK+GD+ HK+GSR+WIKD GP +E+Y GFIE YRDP+G R EFEGFV+ VNK
Sbjct: 307 LRKYVEHFKKGDIALHKDGSRYWIKDVGPAVESYIGFIENYRDPAGTRSEFEGFVAAVNK 366
Query: 189 EMS*KFGDLVDGAERFIKLLPWGEALEKDSFLRPDFTSLDVL 314
E S KF LV AE +K LPWG EKD+FL+PDFT+LDV+
Sbjct: 367 ETSKKFQTLVANAENILKRLPWGTDYEKDTFLKPDFTALDVI 408
>Z81494-8|CAB54212.3| 707|Caenorhabditis elegans Hypothetical
protein F02E9.9a protein.
Length = 707
Score = 144 bits (348), Expect = 2e-35
Identities = 64/102 (62%), Positives = 78/102 (76%)
Frame = +3
Query: 9 LKHYVNSFKEGDLNEHKEGSRFWIKDKGPIIETYQGFIETYRDPSGQRGEFEGFVSMVNK 188
L+ YV FK+GD+ HK+GSR+WIKD GP +E+Y GFIE YRDP+G R EFEGFV+ VNK
Sbjct: 269 LRKYVEHFKKGDIALHKDGSRYWIKDVGPAVESYIGFIENYRDPAGTRSEFEGFVAAVNK 328
Query: 189 EMS*KFGDLVDGAERFIKLLPWGEALEKDSFLRPDFTSLDVL 314
E S KF LV AE +K LPWG EKD+FL+PDFT+LDV+
Sbjct: 329 ETSKKFQTLVANAENILKRLPWGTDYEKDTFLKPDFTALDVI 370
>Z81057-7|CAJ43903.2| 745|Caenorhabditis elegans Hypothetical
protein F02E9.9b protein.
Length = 745
Score = 144 bits (348), Expect = 2e-35
Identities = 64/102 (62%), Positives = 78/102 (76%)
Frame = +3
Query: 9 LKHYVNSFKEGDLNEHKEGSRFWIKDKGPIIETYQGFIETYRDPSGQRGEFEGFVSMVNK 188
L+ YV FK+GD+ HK+GSR+WIKD GP +E+Y GFIE YRDP+G R EFEGFV+ VNK
Sbjct: 307 LRKYVEHFKKGDIALHKDGSRYWIKDVGPAVESYIGFIENYRDPAGTRSEFEGFVAAVNK 366
Query: 189 EMS*KFGDLVDGAERFIKLLPWGEALEKDSFLRPDFTSLDVL 314
E S KF LV AE +K LPWG EKD+FL+PDFT+LDV+
Sbjct: 367 ETSKKFQTLVANAENILKRLPWGTDYEKDTFLKPDFTALDVI 408
>Z92837-6|CAD21654.1| 483|Caenorhabditis elegans Hypothetical
protein F28H6.1b protein.
Length = 483
Score = 29.9 bits (64), Expect = 0.45
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -2
Query: 280 KESFSRASPHGRSFMNRSAPSTRSPNF*DISLLTIDTKPSNSPR 149
+E + +P G S +N A STRS N + +++ ID +P PR
Sbjct: 129 QEEDTNGNPSGESDVNMDATSTRSDNDFESTVMNID-EPEEVPR 171
>Z92837-5|CAB07403.1| 528|Caenorhabditis elegans Hypothetical
protein F28H6.1a protein.
Length = 528
Score = 29.9 bits (64), Expect = 0.45
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -2
Query: 280 KESFSRASPHGRSFMNRSAPSTRSPNF*DISLLTIDTKPSNSPR 149
+E + +P G S +N A STRS N + +++ ID +P PR
Sbjct: 129 QEEDTNGNPSGESDVNMDATSTRSDNDFESTVMNID-EPEEVPR 171
>U88171-1|AAB42251.2| 630|Caenorhabditis elegans Hypothetical
protein F25F8.1 protein.
Length = 630
Score = 29.9 bits (64), Expect = 0.45
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = -2
Query: 271 FSRASPHGRSFMNRSAPSTRSPNF*DIS---LLTIDTKPSNSPRCP 143
F R P+ SF +S P +P S + T+DT+PSN P
Sbjct: 245 FVREGPYVSSFREKSIPLEEAPRLGSASSSSICTVDTRPSNVSSLP 290
>AL031621-9|CAC70087.1| 483|Caenorhabditis elegans Hypothetical
protein F28H6.1b protein.
Length = 483
Score = 29.9 bits (64), Expect = 0.45
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -2
Query: 280 KESFSRASPHGRSFMNRSAPSTRSPNF*DISLLTIDTKPSNSPR 149
+E + +P G S +N A STRS N + +++ ID +P PR
Sbjct: 129 QEEDTNGNPSGESDVNMDATSTRSDNDFESTVMNID-EPEEVPR 171
>AL031621-8|CAA20936.1| 528|Caenorhabditis elegans Hypothetical
protein F28H6.1a protein.
Length = 528
Score = 29.9 bits (64), Expect = 0.45
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -2
Query: 280 KESFSRASPHGRSFMNRSAPSTRSPNF*DISLLTIDTKPSNSPR 149
+E + +P G S +N A STRS N + +++ ID +P PR
Sbjct: 129 QEEDTNGNPSGESDVNMDATSTRSDNDFESTVMNID-EPEEVPR 171
>AF072381-1|AAC62468.1| 483|Caenorhabditis elegans Akt/PKB
serine/threonine kinase protein.
Length = 483
Score = 29.9 bits (64), Expect = 0.45
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -2
Query: 280 KESFSRASPHGRSFMNRSAPSTRSPNF*DISLLTIDTKPSNSPR 149
+E + +P G S +N A STRS N + +++ ID +P PR
Sbjct: 129 QEEDTNGNPSGESDVNMDATSTRSDNDFESTVMNID-EPEEVPR 171
>Z92837-4|CAH10846.1| 193|Caenorhabditis elegans Hypothetical
protein R03E1.4 protein.
Length = 193
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 304 KLVKSGLRKESFSRASPHGRSFMNRSA 224
K+ + GL KESF + S G S MNR A
Sbjct: 12 KIAELGLLKESFEKDSHPGTSEMNRLA 38
>AL132863-7|CAJ80822.1| 231|Caenorhabditis elegans Hypothetical
protein Y37H2A.12 protein.
Length = 231
Score = 26.2 bits (55), Expect = 5.6
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +3
Query: 87 KGPIIETYQGFIETYRDPSGQRGEFEGFVSMVNKEMS*KFGDLV 218
K P+ E Y+ F +T D + EF+ + + KE + G L+
Sbjct: 38 KKPVFEAYKNFCKTIGDDLMEYREFDFWFYKIGKENADLSGKLI 81
>AC024758-2|AAK73905.2| 208|Caenorhabditis elegans Hypothetical
protein Y37E11AM.2 protein.
Length = 208
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +2
Query: 140 ERTARRIRRLRVYGQQGDV 196
ERTARR +R++ GQQ DV
Sbjct: 46 ERTARRKKRIKRKGQQMDV 64
>U28738-12|AAK68400.1| 189|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform c protein.
Length = 189
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -2
Query: 289 GLRKESFSRASPHGRSFMNRSAPSTRSP 206
G RK S SR H R NRS + SP
Sbjct: 157 GDRKRSVSRGRSHSRDGSNRSVSRSPSP 184
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -2
Query: 289 GLRKESFSRASPHGRSFMNRSAPSTRSP 206
G RK S SR H R NRS + SP
Sbjct: 176 GDRKRSVSRGRSHSRDGSNRSVSRSPSP 203
>Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical
protein T21B6.3 protein.
Length = 821
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 178 WSTRRCLKSSGILSMVRNGS*NSCRGA 258
WST C G S R S N+C+GA
Sbjct: 464 WSTCSCTCGDGAKSRRRECSTNNCQGA 490
>AF067949-8|AAX88812.1| 565|Caenorhabditis elegans Peroxisomal
membrane protein relatedprotein 5, isoform c protein.
Length = 565
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -2
Query: 322 EHVNTSKLVKSGLRKESFSRAS 257
E V+T KL +SG++ E+F R S
Sbjct: 345 EFVDTGKLHQSGIKNEAFRRNS 366
>AF067949-7|AAO25995.2| 626|Caenorhabditis elegans Peroxisomal
membrane protein relatedprotein 5, isoform b protein.
Length = 626
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -2
Query: 322 EHVNTSKLVKSGLRKESFSRAS 257
E V+T KL +SG++ E+F R S
Sbjct: 356 EFVDTGKLHQSGIKNEAFRRNS 377
>AF067949-6|AAC19238.1| 598|Caenorhabditis elegans Peroxisomal
membrane protein relatedprotein 5, isoform a protein.
Length = 598
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -2
Query: 322 EHVNTSKLVKSGLRKESFSRAS 257
E V+T KL +SG++ E+F R S
Sbjct: 345 EFVDTGKLHQSGIKNEAFRRNS 366
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,004,562
Number of Sequences: 27780
Number of extensions: 136911
Number of successful extensions: 379
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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