Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_A07
         (326 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    21   2.9  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   2.9  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      21   2.9  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   3.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     20   6.6  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    20   6.6  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                20   8.8  

>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -2

Query: 154 PRCPLGSRYV 125
           PRCP GS+++
Sbjct: 59  PRCPPGSKFI 68


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
 Frame = -1

Query: 77  PESASFFVFIQIAF-FETI 24
           P +  FFVF+  AF F TI
Sbjct: 273 PTALDFFVFLSFAFIFATI 291


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -2

Query: 154 PRCPLGSRYV 125
           PRCP GS+++
Sbjct: 59  PRCPPGSKFI 68


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 294 SLVLGRSPSLGLRPTAGVL*TVPHHRQDPRTFKTS 190
           S+V  RSPS    P+  +L + PH   +    K +
Sbjct: 31  SIVDRRSPSSSRSPSPSLLTSQPHQDHNKEKSKNN 65


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 133 RYVSIKPW*VSIIGPLSLIQNLLPSLCSFKSPSLK 29
           R++  K W  S   P    Q+LLPS     SP L+
Sbjct: 241 RHLERKAWVASFGRPKMTPQSLLPSQTGL-SPYLR 274


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 66  FLLCVHSNRLL 34
           F+LC+  NRL+
Sbjct: 171 FMLCIFGNRLI 181


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 57  KEGSRFWIKDKGPIIETYQGFIET 128
           K   R ++  + PI   Y+  IET
Sbjct: 20  KNDKRIYLSPRTPIKNVYKNNIET 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,610
Number of Sequences: 438
Number of extensions: 1605
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7217694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)