Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_A06
(347 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC132972-1|AAI32973.1| 297|Homo sapiens ribosomal protein L5 pr... 144 5e-35
BC132970-1|AAI32971.1| 297|Homo sapiens ribosomal protein L5 pr... 144 5e-35
BC109370-1|AAI09371.1| 297|Homo sapiens ribosomal protein L5 pr... 144 5e-35
BC001882-1|AAH01882.1| 101|Homo sapiens RPL5 protein protein. 144 5e-35
AL162740-1|CAI22505.1| 297|Homo sapiens ribosomal protein L5 pr... 144 5e-35
AK222604-1|BAD96324.1| 297|Homo sapiens ribosomal protein L5 va... 144 5e-35
AB208980-1|BAD92217.1| 303|Homo sapiens ribosomal protein L5 va... 144 5e-35
U14966-1|AAA85654.1| 297|Homo sapiens ribosomal protein L5 prot... 142 2e-34
AL162740-2|CAI22506.1| 126|Homo sapiens ribosomal protein L5 pr... 81 7e-16
AF435925-1|AAL30811.1| 6307|Homo sapiens very large G protein-co... 29 3.0
AB075823-1|BAB85529.1| 1054|Homo sapiens KIAA1943 protein protein. 29 3.0
AB209694-1|BAD92931.1| 206|Homo sapiens splicing factor, argini... 28 7.0
>BC132972-1|AAI32973.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 144 bits (350), Expect = 5e-35
Identities = 60/77 (77%), Positives = 73/77 (94%)
Frame = +2
Query: 116 QIKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAA 295
+ +RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+ CQ+AY+RIEGD IVCAA
Sbjct: 19 KFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAA 78
Query: 296 YSHELPRYGIPVGLTNY 346
Y+HELP+YG+ VGLTNY
Sbjct: 79 YAHELPKYGVKVGLTNY 95
>BC132970-1|AAI32971.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 144 bits (350), Expect = 5e-35
Identities = 60/77 (77%), Positives = 73/77 (94%)
Frame = +2
Query: 116 QIKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAA 295
+ +RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+ CQ+AY+RIEGD IVCAA
Sbjct: 19 KFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAA 78
Query: 296 YSHELPRYGIPVGLTNY 346
Y+HELP+YG+ VGLTNY
Sbjct: 79 YAHELPKYGVKVGLTNY 95
>BC109370-1|AAI09371.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 144 bits (350), Expect = 5e-35
Identities = 60/77 (77%), Positives = 73/77 (94%)
Frame = +2
Query: 116 QIKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAA 295
+ +RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+ CQ+AY+RIEGD IVCAA
Sbjct: 19 KFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAA 78
Query: 296 YSHELPRYGIPVGLTNY 346
Y+HELP+YG+ VGLTNY
Sbjct: 79 YAHELPKYGVKVGLTNY 95
>BC001882-1|AAH01882.1| 101|Homo sapiens RPL5 protein protein.
Length = 101
Score = 144 bits (350), Expect = 5e-35
Identities = 60/77 (77%), Positives = 73/77 (94%)
Frame = +2
Query: 116 QIKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAA 295
+ +RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+ CQ+AY+RIEGD IVCAA
Sbjct: 19 KFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAA 78
Query: 296 YSHELPRYGIPVGLTNY 346
Y+HELP+YG+ VGLTNY
Sbjct: 79 YAHELPKYGVKVGLTNY 95
>AL162740-1|CAI22505.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 144 bits (350), Expect = 5e-35
Identities = 60/77 (77%), Positives = 73/77 (94%)
Frame = +2
Query: 116 QIKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAA 295
+ +RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+ CQ+AY+RIEGD IVCAA
Sbjct: 19 KFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAA 78
Query: 296 YSHELPRYGIPVGLTNY 346
Y+HELP+YG+ VGLTNY
Sbjct: 79 YAHELPKYGVKVGLTNY 95
>AK222604-1|BAD96324.1| 297|Homo sapiens ribosomal protein L5
variant protein.
Length = 297
Score = 144 bits (350), Expect = 5e-35
Identities = 60/77 (77%), Positives = 73/77 (94%)
Frame = +2
Query: 116 QIKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAA 295
+ +RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+ CQ+AY+RIEGD IVCAA
Sbjct: 19 KFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAA 78
Query: 296 YSHELPRYGIPVGLTNY 346
Y+HELP+YG+ VGLTNY
Sbjct: 79 YAHELPKYGVKVGLTNY 95
>AB208980-1|BAD92217.1| 303|Homo sapiens ribosomal protein L5
variant protein.
Length = 303
Score = 144 bits (350), Expect = 5e-35
Identities = 60/77 (77%), Positives = 73/77 (94%)
Frame = +2
Query: 116 QIKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAA 295
+ +RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+ CQ+AY+RIEGD IVCAA
Sbjct: 26 KFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAA 85
Query: 296 YSHELPRYGIPVGLTNY 346
Y+HELP+YG+ VGLTNY
Sbjct: 86 YAHELPKYGVKVGLTNY 102
>U14966-1|AAA85654.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 142 bits (345), Expect = 2e-34
Identities = 59/77 (76%), Positives = 72/77 (93%)
Frame = +2
Query: 116 QIKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAA 295
+ +RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+ CQ+AY+RIEGD IVCA
Sbjct: 19 KFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAR 78
Query: 296 YSHELPRYGIPVGLTNY 346
Y+HELP+YG+ VGLTNY
Sbjct: 79 YAHELPKYGVKVGLTNY 95
>AL162740-2|CAI22506.1| 126|Homo sapiens ribosomal protein L5
protein.
Length = 126
Score = 81.4 bits (192), Expect = 7e-16
Identities = 32/45 (71%), Positives = 42/45 (93%)
Frame = +2
Query: 212 LIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGIPVGLTNY 346
+IVR++N+D+ CQ+AY+RIEGD IVCAAY+HELP+YG+ VGLTNY
Sbjct: 1 MIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNY 45
>AF435925-1|AAL30811.1| 6307|Homo sapiens very large G protein-coupled
receptor 1b protein.
Length = 6307
Score = 29.5 bits (63), Expect = 3.0
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +2
Query: 47 FRNILENGIRESSKEQRTSSGTGQIKRRREGKTDYYARKRLV-VQDKNKYNTPKYRLIVR 223
F IL NG + RT T ++ RR Y+A R+V VQ+ N ++R
Sbjct: 974 FTVILLNGTGGAKVGNRT---TATLRIRRNDDPIYFAEPRVVRVQEGETANFT----VLR 1026
Query: 224 LSNKDVTCQVAYSRIEG 274
+ DVTC V Y+ +G
Sbjct: 1027 NGSVDVTCMVQYATKDG 1043
>AB075823-1|BAB85529.1| 1054|Homo sapiens KIAA1943 protein protein.
Length = 1054
Score = 29.5 bits (63), Expect = 3.0
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +2
Query: 47 FRNILENGIRESSKEQRTSSGTGQIKRRREGKTDYYARKRLV-VQDKNKYNTPKYRLIVR 223
F IL NG + RT T ++ RR Y+A R+V VQ+ N ++R
Sbjct: 562 FTVILLNGTGGAKVGNRT---TATLRIRRNDDPIYFAEPRVVRVQEGETANFT----VLR 614
Query: 224 LSNKDVTCQVAYSRIEG 274
+ DVTC V Y+ +G
Sbjct: 615 NGSVDVTCMVQYATKDG 631
>AB209694-1|BAD92931.1| 206|Homo sapiens splicing factor,
arginine/serine-rich 12 variant protein.
Length = 206
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = +2
Query: 41 FYFRNILENGIRESSKEQRTSSGTGQIKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIV 220
F+FR+ N R K++R S K+R + + +R R +DK K K +
Sbjct: 6 FFFRSRSHNRSRSRQKDRRRSKSPH--KKRSKSRERRKSRSRSHSRDKRKDTREKIKEKE 63
Query: 221 RLSNKD 238
R+ KD
Sbjct: 64 RVKEKD 69
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,392,661
Number of Sequences: 237096
Number of extensions: 1037513
Number of successful extensions: 6290
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6290
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2026198370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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