Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_A03
(277 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.12c |||exosome subunit Rrp40 |Schizosaccharomyces pomb... 25 1.5
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 1.5
SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase Ark1|Schizosa... 25 2.0
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom... 25 2.6
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 2.6
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 24 4.6
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 24 4.6
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha... 24 4.6
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 23 6.1
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo... 23 6.1
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk... 23 6.1
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc... 23 6.1
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 23 6.1
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat... 23 8.0
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual 23 8.0
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 23 8.0
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 23 8.0
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb... 23 8.0
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 23 8.0
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr... 23 8.0
>SPAC22A12.12c |||exosome subunit Rrp40 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 240
Score = 25.4 bits (53), Expect = 1.5
Identities = 8/28 (28%), Positives = 16/28 (57%)
Frame = -1
Query: 154 VPTRQSIGFSISLWIKSLNTQLTLAVCT 71
+P ++G + +W+ S N T+ +CT
Sbjct: 189 IPFEIAVGMNGRVWVNSENLSTTVLICT 216
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.4 bits (53), Expect = 1.5
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = -3
Query: 152 ANSSINRLLNISLDQVTQHPTYTCSLYK 69
+ S I +L N+S++ V+++ + S+YK
Sbjct: 22 SGSKILKLTNLSMENVSENAQFVASVYK 49
>SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase
Ark1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 25.0 bits (52), Expect = 2.0
Identities = 14/58 (24%), Positives = 27/58 (46%)
Frame = -3
Query: 200 SHSFVIHLYPFAHNNRANSSINRLLNISLDQVTQHPTYTCSLYKILMQHTRRERTSLE 27
++ F++ PF + +++ R+ + L + P L L+QH +R SLE
Sbjct: 275 TYEFLVGAPPFEDMSGHSATYKRIAKVDLKIPSFVPPDARDLISRLLQHNPEKRMSLE 332
>SPAPB1A11.01 ||SPAPB24D3.11|membrane
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 495
Score = 24.6 bits (51), Expect = 2.6
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 213 LVYSTCGQLYLHRPLPIYGF 272
L++S +LY RPL I+G+
Sbjct: 93 LIFSPLSELYGRRPLNIFGY 112
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 24.6 bits (51), Expect = 2.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 141 NQSASQYLFGSSHSTPNLHLQFVQNFNATHT 49
N S S Y FGSS+ P L +F +H+
Sbjct: 89 NTSMSGYTFGSSNFVPYNLLSNTPSFTTSHS 119
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 23.8 bits (49), Expect = 4.6
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1
Query: 223 LYTSEATGATRSSFTYILSHIIIVPTRQSIGFSISLWIKSLNTQLTLAVC 74
L++S A A + + L + I P+R + F I IKS+ T L + +C
Sbjct: 822 LFSSHA--ALKKAGNLPLVQLFISPSRYAGIFDILCNIKSIATSLDIHIC 869
Score = 23.4 bits (48), Expect = 6.1
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -3
Query: 176 YPFAHNNRANSS--INRLLNISLDQVTQHP 93
Y H +N + ++ L+N+S Q+T HP
Sbjct: 948 YKMIHKLGSNIALVVDELINLSSKQITSHP 977
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 23.8 bits (49), Expect = 4.6
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2
Query: 209 FTCI*YMWATLPTPPT 256
F I Y W +LP+PP+
Sbjct: 688 FLAIIYSWLSLPSPPS 703
>SPBC428.18 |cdt1||replication licensing factor
Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 444
Score = 23.8 bits (49), Expect = 4.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 55 CCIKILYKLQV*VGC*VT*SKEILRSRLIDEL 150
C I +L +QV + K LRS+LI+EL
Sbjct: 401 CTINLLGNIQVVTFSRIVNGKPYLRSQLIEEL 432
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 23.4 bits (48), Expect = 6.1
Identities = 9/22 (40%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -1
Query: 172 LSHIIIVPTRQSIGF-SISLWI 110
++HI++V TR+ I F ++ WI
Sbjct: 455 MAHILVVTTRERINFPELNEWI 476
>SPBC11G11.02c |end3||actin cortical patch component End3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 375
Score = 23.4 bits (48), Expect = 6.1
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +3
Query: 102 SDLIQRDIEKPID*RVGTI 158
S LIQRD++K +D ++G +
Sbjct: 305 SKLIQRDLQKVLDYKLGIL 323
>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 306
Score = 23.4 bits (48), Expect = 6.1
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -1
Query: 214 SEATGATRSSFTYILSHIIIVPTRQSIGFSISLWIK 107
SE + +S YI+SH++ R S F I + K
Sbjct: 262 SEILPSVDTSIQYIVSHLVTYSNRASPSFVIESFPK 297
>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 596
Score = 23.4 bits (48), Expect = 6.1
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -3
Query: 173 PFAHNNRANS-SINRLLNISLDQVTQHPTYTCS 78
PF + ++S SIN+ S Q T+H TY S
Sbjct: 198 PFLRSRSSSSYSINKKKGTSGGQATRHLTYALS 230
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 23.4 bits (48), Expect = 6.1
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = +1
Query: 22 KNSRLVLSLRVCCIKIL 72
KN+ L++ LRV C+++L
Sbjct: 1312 KNAALLIRLRVVCVELL 1328
>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
phosphatidyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 23.0 bits (47), Expect = 8.0
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +1
Query: 211 HLYIVHVGNSTYTAHYQFMDL 273
H ++ +G+S YT+ Q +DL
Sbjct: 460 HPFLTTIGSSNYTSRSQQLDL 480
>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 656
Score = 23.0 bits (47), Expect = 8.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 166 AKGYK*MTNEWLRLLHLYIVHVGNSTYTAHY 258
AK Y +TN ++++L VG + T HY
Sbjct: 411 AKLYTDITNNGYKIMYLTSRSVGQADSTRHY 441
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 23.0 bits (47), Expect = 8.0
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -3
Query: 158 NRANSSINRLLNISLDQVTQHPTYTCS 78
N+A ++NR +N+S + P+ +CS
Sbjct: 184 NQARGAVNRGVNLSEARPAAQPSGSCS 210
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 23.0 bits (47), Expect = 8.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 196 WLRLLHLYIVHVGNSTYTAHY 258
W L+ + +VH G ST + HY
Sbjct: 370 WYELIGV-LVHAGGSTRSGHY 389
>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 23.0 bits (47), Expect = 8.0
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 66 NFVQTASVSWVLSDLIQRDI 125
NFVQ WV S L+Q D+
Sbjct: 113 NFVQAIVTYWVESILVQGDL 132
>SPAC3C7.06c |pit1||serine/threonine protein kinase
Pit1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 650
Score = 23.0 bits (47), Expect = 8.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 150 QLVNQSASQYLFGSSHSTPNLHLQFVQNFNAT 55
Q VN +S+Y SS+ +P LH + + AT
Sbjct: 536 QSVNSESSKYSPRSSNHSPTLHSKDLHRDMAT 567
>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 537
Score = 23.0 bits (47), Expect = 8.0
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -1
Query: 232 PHVLYTSEATGATRSS-FTYILSHIIIVPTRQSIGFSISLWIKSLN 98
P + S GA SS + S + + T +++GF ISL++ N
Sbjct: 179 PMMAINSAIAGAFGSSALANVASSMCDIFTPETVGFGISLFVWGAN 224
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,181,951
Number of Sequences: 5004
Number of extensions: 21196
Number of successful extensions: 59
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 61717020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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