Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_A03
         (277 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ395340-1|ABD59345.1|  716|Homo sapiens chromosome 14 open read...    29   3.5  
DQ395339-1|ABD59344.1|  716|Homo sapiens chromosome 14 open read...    29   3.5  
DQ395338-1|ABD59343.1|  707|Homo sapiens chromosome 14 open read...    29   3.5  
DQ333316-1|ABD24032.1| 2881|Homo sapiens PRIC320 isoform 1 protein.    27   8.0  
AY647157-1|AAT66509.1| 2881|Homo sapiens KISH2 protein.                27   8.0  
AY243500-1|AAQ24287.1| 2897|Homo sapiens chromatin remodeling fa...    27   8.0  
AK092208-1|BAC03829.1|  638|Homo sapiens protein ( Homo sapiens ...    27   8.0  
AB002306-1|BAA20767.3| 2759|Homo sapiens KIAA0308 protein.             27   8.0  

>DQ395340-1|ABD59345.1|  716|Homo sapiens chromosome 14 open reading
           frame 173 isoform 3 protein.
          Length = 716

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 144 RVGTIIMCERI*VNDERVAPVASLVYSTCGQLYLHRPLPIY 266
           R+  +++CE      + V P A LV + C  L   R LPI+
Sbjct: 184 RIECMLLCEGAAAVLDMVRPKAQLVLAACESLLTSRQLPIF 224


>DQ395339-1|ABD59344.1|  716|Homo sapiens chromosome 14 open reading
           frame 173 isoform 2 protein.
          Length = 716

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 144 RVGTIIMCERI*VNDERVAPVASLVYSTCGQLYLHRPLPIY 266
           R+  +++CE      + V P A LV + C  L   R LPI+
Sbjct: 184 RIECMLLCEGAAAVLDMVRPKAQLVLAACESLLTSRQLPIF 224


>DQ395338-1|ABD59343.1|  707|Homo sapiens chromosome 14 open reading
           frame 173 isoform 1 protein.
          Length = 707

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 144 RVGTIIMCERI*VNDERVAPVASLVYSTCGQLYLHRPLPIY 266
           R+  +++CE      + V P A LV + C  L   R LPI+
Sbjct: 184 RIECMLLCEGAAAVLDMVRPKAQLVLAACESLLTSRQLPIF 224


>DQ333316-1|ABD24032.1| 2881|Homo sapiens PRIC320 isoform 1 protein.
          Length = 2881

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -2

Query: 156 SCQLVN--QSASQYLFGSSHSTPNLHLQFVQNFNATHTQR 43
           SC + N  Q +S Y F S+H +PN  LQ      + HT +
Sbjct: 261 SCSVSNSQQFSSHYSFSSNHISPNSLLQSSAVLASNHTNQ 300


>AY647157-1|AAT66509.1| 2881|Homo sapiens KISH2 protein.
          Length = 2881

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -2

Query: 156 SCQLVN--QSASQYLFGSSHSTPNLHLQFVQNFNATHTQR 43
           SC + N  Q +S Y F S+H +PN  LQ      + HT +
Sbjct: 261 SCSVSNSQQFSSHYSFSSNHISPNSLLQSSAVLASNHTNQ 300


>AY243500-1|AAQ24287.1| 2897|Homo sapiens chromatin remodeling
           factor CHROM1 protein.
          Length = 2897

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -2

Query: 156 SCQLVN--QSASQYLFGSSHSTPNLHLQFVQNFNATHTQR 43
           SC + N  Q +S Y F S+H +PN  LQ      + HT +
Sbjct: 261 SCSVSNSQQFSSHYSFSSNHISPNSLLQSSAVLASNHTNQ 300


>AK092208-1|BAC03829.1|  638|Homo sapiens protein ( Homo sapiens
           cDNA FLJ34889 fis, clone NT2NE2017397, weakly similar to
           Rattus norvegicus beta-catenin binding protein mRNA. ).
          Length = 638

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -2

Query: 156 SCQLVN--QSASQYLFGSSHSTPNLHLQFVQNFNATHTQR 43
           SC + N  Q +S Y F S+H +PN  LQ      + HT +
Sbjct: 261 SCSVSNSQQFSSHYSFSSNHISPNSLLQSSAVLASNHTNQ 300


>AB002306-1|BAA20767.3| 2759|Homo sapiens KIAA0308 protein.
          Length = 2759

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -2

Query: 156 SCQLVN--QSASQYLFGSSHSTPNLHLQFVQNFNATHTQR 43
           SC + N  Q +S Y F S+H +PN  LQ      + HT +
Sbjct: 138 SCSVSNSQQFSSHYSFSSNHISPNSLLQSSAVLASNHTNQ 177


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,746,100
Number of Sequences: 237096
Number of extensions: 713727
Number of successful extensions: 1197
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 76,859,062
effective HSP length: 69
effective length of database: 60,499,438
effective search space used: 1330987636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)