Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_A03
         (277 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038615-5|AAB94142.1|  934|Caenorhabditis elegans Hypothetical ...    26   4.4  
Z78061-3|CAB60286.1|  662|Caenorhabditis elegans Hypothetical pr...    25   5.8  
AL117200-16|CAB60587.1|  662|Caenorhabditis elegans Hypothetical...    25   5.8  
AC006761-6|AAF60548.2|  242|Caenorhabditis elegans Hypothetical ...    25   5.8  
Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical pr...    25   7.7  
Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical pr...    25   7.7  
U58746-4|AAB00624.1|  751|Caenorhabditis elegans Phospholipase c...    25   7.7  

>AF038615-5|AAB94142.1|  934|Caenorhabditis elegans Hypothetical
           protein R02D3.1 protein.
          Length = 934

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 120 LFGSSHSTPNLHLQFVQNFNATH 52
           L    H+TP LH+    N+N +H
Sbjct: 176 LLALGHNTPFLHMGLAHNYNDSH 198


>Z78061-3|CAB60286.1|  662|Caenorhabditis elegans Hypothetical
           protein C48G7.3 protein.
          Length = 662

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +2

Query: 188 RTSGSGCFTCI*YMWATLPTPPTT 259
           RTS  GC     YMW  LP P  T
Sbjct: 467 RTSTVGCEVEAWYMWELLPQPIVT 490


>AL117200-16|CAB60587.1|  662|Caenorhabditis elegans Hypothetical
           protein C48G7.3 protein.
          Length = 662

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +2

Query: 188 RTSGSGCFTCI*YMWATLPTPPTT 259
           RTS  GC     YMW  LP P  T
Sbjct: 467 RTSTVGCEVEAWYMWELLPQPIVT 490


>AC006761-6|AAF60548.2|  242|Caenorhabditis elegans Hypothetical
           protein Y41G9A.2 protein.
          Length = 242

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +1

Query: 118 EILRSR--LIDELARLLCAKGYK*MTNEW 198
           E L+SR  ++D +   +C +GY+ M N W
Sbjct: 109 EPLKSRYSVVDSVLDYVCGEGYQSMLNNW 137


>Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical protein
            C18D4.2a protein.
          Length = 1817

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 187  SFTYILSHIIIVPTRQSIGFSISL 116
            SFTYIL H ++   +    FSISL
Sbjct: 1496 SFTYILRHSLLNQKKPIESFSISL 1519


>Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical protein
            C18D4.2a protein.
          Length = 1817

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 187  SFTYILSHIIIVPTRQSIGFSISL 116
            SFTYIL H ++   +    FSISL
Sbjct: 1496 SFTYILRHSLLNQKKPIESFSISL 1519


>U58746-4|AAB00624.1|  751|Caenorhabditis elegans Phospholipase c
           protein 4 protein.
          Length = 751

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -1

Query: 196 TRSSFTYILSHIIIVPTRQSIGFSISLWI 110
           TR  +  +L+H+I V   Q + F+ + W+
Sbjct: 133 TRDKWVSVLTHLISVAKHQRVVFNETAWL 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,547,654
Number of Sequences: 27780
Number of extensions: 119681
Number of successful extensions: 311
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 238114316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)